PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015866516.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 189aa MW: 22124.2 Da PI: 5.7 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76.3 | 7.3e-24 | 8 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratk..sgyWk 84 +p+G+ F+Ptd+elv +yL +k++g +++ +i e d + + ePw++ + +a+++++yfF+k +k++++gkr r++ g+Wk XP_015866516.1 8 VPRGCSFRPTDDELVGYYLMNKATGCPCPDLAMILEYDFLgDKEPWEIWNlfqpcifrYWDAHHEDLYFFTKLKKSNPRGKRICRKVGstGGTWK 102 589************************999999*9*9865167*****6446787776555678899******************7544489*** PP NAM 85 atgkdkevlsk.kgelvglkktLvfy....kgrapkgektdWvmheyrl 128 + + ev++ +++++glkk + + ++++++ +W+m ey l XP_015866516.1 103 GQDSGSEVYDDlSKQVIGLKKRFQYQkaktEEDDEEDDGVSWIMFEYCL 151 **********988999**********443333444555789******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-29 | 4 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.085 | 8 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-17 | 9 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MALEESMVPR GCSFRPTDDE LVGYYLMNKA TGCPCPDLAM ILEYDFLGDK EPWEIWNLFQ 60 PCIFRYWDAH HEDLYFFTKL KKSNPRGKRI CRKVGSTGGT WKGQDSGSEV YDDLSKQVIG 120 LKKRFQYQKA KTEEDDEEDD GVSWIMFEYC LAGSLAMINT DYVLCQIRKK FPTQHNHKIN 180 MYTNISYMQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015866516.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015866516.1 | 1e-143 | protein CUP-SHAPED COTYLEDON 1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-14 | NAC family protein |