PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015866410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 109aa MW: 12646.4 Da PI: 9.4671 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.2 | 2.6e-12 | 11 | 98 | 9 | 93 |
HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 k +rl++p +f + ++g +++ ++ ++ +g ++++ l++r++ g+ ++ ++GW++Fvk+ng+ +gD+++F d++ +ef + XP_015866410.1 11 TDYK-SRLSVPTEFHSLINGC-HGGAEIAIRAyDTGFRYDFVLSVRNGAGQiyqkpVFQRRGWQRFVKENGVLTGDTITFWKDQQiEEF--M 98 4444.56*******9777544.35557777776799*********999999666666666********************976665665..4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.009 | 2 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-9 | 5 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.61E-12 | 6 | 100 | No hit | No description |
SuperFamily | SSF101936 | 1.22E-10 | 6 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-9 | 14 | 98 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MAALSKEVTE TDYKSRLSVP TEFHSLINGC HGGAEIAIRA YDTGFRYDFV LSVRNGAGQI 60 YQKPVFQRRG WQRFVKENGV LTGDTITFWK DQQIEEFMIR SVRPFKNYM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015866410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |