PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866392.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HB-PHD
Protein Properties Length: 883aa    MW: 97999.5 Da    PI: 6.1093
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866392.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.22.8e-137337751254
                     HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     l++L + F++n+yp+++++e LA++lg+t  qV+ WF N R  
  XP_015866392.1 733 LQRLYKSFKENQYPDRATKESLAQELGITSHQVSKWFENVRWS 775
                     799************************************9976 PP
2PHD383.7e-13362417151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C++    ++++++lCdg C++ fH+ Cl+++l se +p g   wlC+ C++k
  XP_015866392.1 362 YCAKCESkdLSAGNDIILCDGaCDRGFHQFCLEPPLLSEHIPPGdeGWLCPGCDCK 417
                     7*****977677********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.1E-13352420IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.9E-12358416IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.718360417IPR019787Zinc finger, PHD-finger
PfamPF006281.3E-10362417IPR019787Zinc finger, PHD-finger
CDDcd155048.21E-27362414No hitNo description
SMARTSM002495.0E-9362415IPR001965Zinc finger, PHD-type
PROSITE patternPS013590363414IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003895.3E-11721783IPR001356Homeobox domain
SuperFamilySSF466891.5E-12723780IPR009057Homeodomain-like
PROSITE profilePS5007113.264733779IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-13733781IPR009057Homeodomain-like
PfamPF000469.2E-11733776IPR001356Homeobox domain
CDDcd000863.51E-11733780No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MSIQTGNTSC PQHVMSEQIY ECNAGNMCIE ASKQNHHLGS DLLQNDLEET SSPVPSCVVN  60
EKLEHILENE NSISGGQLEL SSENMSKDCE TGKSSCCQRT TSEQNFDSSS IYSELPIQKD  120
QLISVKVQYF PVSTRTAVSN SILTEHLRPS PVPVRHLEPT LGDVNKGPND KQLEPSSGDV  180
NKKSSHEHFH TPPKSVMNNS SRLGRRDKRT AKSKKKKYML RSLVGSDRVL RSRTREKPNA  240
LESSANLGNG NGAKRGRKRR NKRGKRIMDD EFSKIRKHLR YLLYRIGYEQ NLIDAYSGEG  300
WKGYSLEKLK PERELQRATS EILRRKLKIR DLFQRLDSLC AEGRFPNSLF DSEGQIDSED  360
IYCAKCESKD LSAGNDIILC DGACDRGFHQ FCLEPPLLSE HIPPGDEGWL CPGCDCKFDC  420
VDLLNDSQGT DLSISDSWEK VFPEAAAAAE GKNKDHNLEL PSDESDDDDY DPDGPATDEK  480
VQGDESSSNE SSSNESDYAS ASEELEAPTN NEQHLGLPSD DSEDDDYDPQ APDIEEGVKQ  540
ESSSSDFTSD SEDLAVALGD NRSSENVGPM SPSSNSDPKK TARESDGQNR HVGKNTSLRK  600
ELLSIQDDSL PVSGKRHIER LDYKKLHDEE YGNVPSDSSD DEDFTDTAAP EKRQKSTGQV  660
NSLSPSENAS TTKNVKITEP ISFDISEHAP KRRRGRKSKI ENKNNSKSKS LEGSSKSAST  720
SGKEKYVDGH IVLQRLYKSF KENQYPDRAT KESLAQELGI TSHQVSKWFE NVRWSVRHSS  780
SAAEGRSASN TGTASPQTNA IPKSEKQKNI QNSTQSGANN KKLPRTGDGQ NSTIPNTRKR  840
KGRSVNQASD IDSRIETPKP QAVLETPESG GRTKTRRRRK SVI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866392.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024924230.10.0homeobox protein HAT3.1, partial
TrEMBLA0A2P5EYJ90.0A0A2P5EYJ9_TREOI; Octamer-binding transcription factor
STRINGXP_010099058.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.13e-95Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain