PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015866386.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 232aa MW: 25984.8 Da PI: 9.7649 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.8 | 2.4e-22 | 17 | 63 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+sn qvtfskRr g++KKA+EL++LC+ae+a+++fs+ k++ + XP_015866386.1 17 MSNDSNLQVTFSKRRSGLFKKASELCTLCGAEIAIVVFSPGRKVFSF 63 58**************************************9999877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.694 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-29 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.17E-33 | 8 | 84 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-25 | 8 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-24 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MEKKISRGRQ KVAMVKMSND SNLQVTFSKR RSGLFKKASE LCTLCGAEIA IVVFSPGRKV 60 FSFGHPCVEA VIDRFLNGIR PAHQNSGTMQ LIEAHRNASV RELNLQLTQI TNQLEAEKKR 120 GEELNRMRKV SQAQCWWECP IEEMELEQLE QLKASMEELK KNVSKQADRV LIQNSNPVAA 180 PFFAGSSSSG QGAAMITYPF DVKNGGFGGN IMPNLMPHHH HAYNLGYGRG FF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015866386.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015866386.1 | 1e-174 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 4e-68 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2N9GC17 | 1e-117 | A0A2N9GC17_FAGSY; Uncharacterized protein | ||||
STRING | XP_006487058.1 | 1e-105 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 9e-56 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
---|---|---|---|
|