PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015866235.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Nin-like

Protein Properties

Length: 1000aa MW: 110583 Da PI: 4.9531

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015866235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	602	653	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ XP_015866235.1 602 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 653 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.87	586	673	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	605	653	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.35E-22	896	982	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.3E-25	897	979	No hit	No description
SMART	SM00666	5.6E-24	900	982	IPR000270	PB1 domain
PROSITE profile	PS51745	22.391	900	982	IPR000270	PB1 domain
Pfam	PF00564	8.3E-18	901	981	IPR000270	PB1 domain
CDD	cd06407	2.47E-31	901	981	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence Send to blast
MEYPISSKEK GIENWASSRA QVESMASFDG GTRNSLAEDM FNNISEFMDF DNYAGWCDSS 60 SAVDQMAASY GLPSYPSVSY APMDAFNFTE QSIGSLPVAE AGGDFNLEKG PLNYGDKTVF 120 QQVDNQYGLS SNSNVANESV TKQSDGSFQQ NNVVDVANSI ISRPPAVSLD EKMLKALSLF 180 KESSGGGILA QVWVPMKHGD QYFLSTCERP YLLDHMLAGY REVSRLYKFS AEGKQGSFPG 240 LPGRVFMSKI PEWTSNVGYY SKTEYLRADH AHNHQVRGSI ALPVFDSEPE VSCCAVLELV 300 TTKEKSNFDS EMEVVCRSLQ AVNLRTSVPP RLLPQCLSEN QKDALAEIVD VLRVVCHAHR 360 LPLALTWIPC CYTEGAGKEN MGLHVREGNK SSNGKSILCI EETACYVNDR AMLDFVRSCV 420 ENYLEEGQGL AGKALQSNVP FFFPDVKTYN IYEYPLVHHA RKFGLNAAVA IRLRSTYTGD 480 EDYILELFLP VNMTGALEQQ LLLNNLSRTM QRICKSLRTV SETQLSGAGF SDIEFQKGSI 540 QNFPIMSRGN SQNALSDSDV NSMEGMILNI PDQKNEGIEA DIPCEQAVGG PRRQMEKKRN 600 TAEKNVSLSV LQQYFSGSLK DAAKSIGVCP TTLKRICRQH GISRWPSRKI NKVNRSLRKI 660 QSVLDSVKGV EGGLKFDPTT GEFMATASVI QDFDTQKNLL FPEKIQSMRN PELITQHAVQ 720 ATTVPFTEGE DFVIKLEEDE YCVGGNIPIQ NSCETESKKL NTPILNSNGS SKPISIDTGS 780 NQPCSFVTRL QNCPENAFLP SYIVKGVKQL SQNKYSMKLE NSDWHFASRS SSSMAAADEM 840 DAGGDDDDGI LEHNQPTSSS MTDSSNGSGS MVNDCSSGSQ GFDEHKHPKG KRNCVDGESK 900 ITVKATYKED TIRFKFEPSA GCFQLYEEVA RRFKLQNGTF QLKYLDDEEE WVMLVSESDL 960 QECLEILDDI GTRTVKFQVR DKPCGLSSSG SSNCFLTGSS

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence Send to blast

MEYPISSKEK GIENWASSRA QVESMASFDG GTRNSLAEDM FNNISEFMDF DNYAGWCDSS  60
SAVDQMAASY GLPSYPSVSY APMDAFNFTE QSIGSLPVAE AGGDFNLEKG PLNYGDKTVF  120
QQVDNQYGLS SNSNVANESV TKQSDGSFQQ NNVVDVANSI ISRPPAVSLD EKMLKALSLF  180
KESSGGGILA QVWVPMKHGD QYFLSTCERP YLLDHMLAGY REVSRLYKFS AEGKQGSFPG  240
LPGRVFMSKI PEWTSNVGYY SKTEYLRADH AHNHQVRGSI ALPVFDSEPE VSCCAVLELV  300
TTKEKSNFDS EMEVVCRSLQ AVNLRTSVPP RLLPQCLSEN QKDALAEIVD VLRVVCHAHR  360
LPLALTWIPC CYTEGAGKEN MGLHVREGNK SSNGKSILCI EETACYVNDR AMLDFVRSCV  420
ENYLEEGQGL AGKALQSNVP FFFPDVKTYN IYEYPLVHHA RKFGLNAAVA IRLRSTYTGD  480
EDYILELFLP VNMTGALEQQ LLLNNLSRTM QRICKSLRTV SETQLSGAGF SDIEFQKGSI  540
QNFPIMSRGN SQNALSDSDV NSMEGMILNI PDQKNEGIEA DIPCEQAVGG PRRQMEKKRN  600
TAEKNVSLSV LQQYFSGSLK DAAKSIGVCP TTLKRICRQH GISRWPSRKI NKVNRSLRKI  660
QSVLDSVKGV EGGLKFDPTT GEFMATASVI QDFDTQKNLL FPEKIQSMRN PELITQHAVQ  720
ATTVPFTEGE DFVIKLEEDE YCVGGNIPIQ NSCETESKKL NTPILNSNGS SKPISIDTGS  780
NQPCSFVTRL QNCPENAFLP SYIVKGVKQL SQNKYSMKLE NSDWHFASRS SSSMAAADEM  840
DAGGDDDDGI LEHNQPTSSS MTDSSNGSGS MVNDCSSGSQ GFDEHKHPKG KRNCVDGESK  900
ITVKATYKED TIRFKFEPSA GCFQLYEEVA RRFKLQNGTF QLKYLDDEEE WVMLVSESDL  960
QECLEILDDI GTRTVKFQVR DKPCGLSSSG SSNCFLTGSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015866235.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015866231.1	0.0	protein NLP9-like
Refseq	XP_015866233.1	0.0	protein NLP9-like
Refseq	XP_015866234.1	0.0	protein NLP9-like
Refseq	XP_015866235.1	0.0	protein NLP9-like
Refseq	XP_024924160.1	0.0	protein NLP9-like
Refseq	XP_024924161.1	0.0	protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2P5G0I9	0.0	A0A2P5G0I9_TREOI; NIN-like transcription factor
STRING	XP_008237190.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]