PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866170.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 150aa    MW: 16683.1 Da    PI: 10.0609
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF755.9e-242269249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + en+sn+qvtfskRr+g++KKA ELS+LC+aeva i+fs++ k++ y
  XP_015866170.1 22 KLENNSNKQVTFSKRRAGLFKKAGELSILCGAEVAAIVFSPNSKVFCY 69
                    679****************************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-321372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.0531373IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-291492IPR002100Transcription factor, MADS-box
CDDcd002651.04E-321481No hitNo description
PRINTSPR004041.9E-221535IPR002100Transcription factor, MADS-box
PfamPF003191.4E-232369IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-223550IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-225071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MIVRTNKTIK KTQGRQKIEI KKLENNSNKQ VTFSKRRAGL FKKAGELSIL CGAEVAAIVF  60
SPNSKVFCYG HPSPETVIQR YIHSTTSSNT SNSSEAAVAA MASAAATSAE RELVPMEEFN  120
REYREAMKEL EIEKKRAEEV KLAVEEKKSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A3e-171481168Myocyte-specific enhancer factor 2A
3mu6_B3e-171481168Myocyte-specific enhancer factor 2A
3mu6_C3e-171481168Myocyte-specific enhancer factor 2A
3mu6_D3e-171481168Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866170.11e-105agamous-like MADS-box protein AGL62
TrEMBLA0A498KGD99e-43A0A498KGD9_MALDO; Uncharacterized protein
STRINGXP_008232412.11e-43(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-30AGAMOUS-like 62