PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866148.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 352aa    MW: 39520.2 Da    PI: 6.8167
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05191210120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_015866148.1 191 FSCPVCYKTFNRYNNMQMHM 210
                     89*****************9 PP
2zf-C2H214.50.0001275297123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_015866148.1 275 FMCRKCGKAFAVRGDWRTHEKNC 297
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.25E-5187213No hitNo description
Gene3DG3DSA:3.30.160.606.1E-6191210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.743191218IPR007087Zinc finger, C2H2
SMARTSM003550.45191213IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
SuperFamilySSF576671.64E-6257295No hitNo description
Gene3DG3DSA:3.30.160.609.3E-6262295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808275295IPR007087Zinc finger, C2H2
SMARTSM0035549275295IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MADPYSNFFT GLFKFNPFHH DSSPPSNPPP PLPLPPPQTP FPHSFFINHF QTPSSSPPSP  60
PLREALPLLS LSPTKHEYKQ EQLLEDHYST TTTTAMDVLH KGKEEEDEED DEETVTVALH  120
IGLPSPSAAE MASVLSANSS SELTADNNKD HGGDHGGGDQ DSSGYPIMSR LNKGQYWIPT  180
PSQILIGPTQ FSCPVCYKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT GMLRLPCYCC  240
APGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW RTHEKNCGKL  300
WYCICGSDFK HKRSLKDHIK AFGNGHAAYG IDGFEEEDEP ASEVEQDNES MQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866148.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866148.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-157ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLF6HL470.0F6HL47_VITVI; Uncharacterized protein
STRINGVIT_08s0007g08070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-141C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]