PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866129.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 396aa    MW: 45085.6 Da    PI: 5.4119
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866129.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.4e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
   XP_015866129.1 16 RGPWSPAEDLRLITFIQKFGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding56.85.2e-1869114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e +++++k lG++ W++Ia++++ gRt++++k+ w+++l
   XP_015866129.1  69 RGNFTKEEEETIIKLHKALGNR-WSKIASHLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.2471163IPR017930Myb domain
SuperFamilySSF466891.43E-2914110IPR009057Homeodomain-like
SMARTSM007174.2E-121565IPR001005SANT/Myb domain
PfamPF002495.5E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-221770IPR009057Homeodomain-like
CDDcd001672.12E-81863No hitNo description
PROSITE profilePS5129426.90564118IPR017930Myb domain
SMARTSM007178.4E-1768116IPR001005SANT/Myb domain
PfamPF002492.9E-1669114IPR001005SANT/Myb domain
CDDcd001672.04E-1171114No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2771118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGRGRAPCCD KTQVKRGPWS PAEDLRLITF IQKFGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTKEEEETI IKLHKALGNR WSKIASHLPG RTDNEIKNVW NTHLKKRISS  120
KNSTAASDDQ ISKESSITSS SLSSSSSSSS SSSLSSSNSV LSSGNKHNFE SPELVGNDIQ  180
SDHHRKDLEK NIDHDNDHDH HAQVKKDPLK EVTSSFSVSS YDSIGSNSSQ IVEVSKPGDD  240
HDHQENYMDL MLLDYDVNTM EVNQPDDEVI PLEADFDFWD MLDNLCPFQP NNNHGHDHHQ  300
VHCHSSSFEE EHSREIENKK WFRYLENELG LEATAKENDD GDENLQELVA KDHDVKESFQ  360
CDIEEEARVG VQEFDPCLTT TTYCPMWLSL PKKSPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-27161184105C-Myb DNA-Binding Domain
1msf_C2e-27161184105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866129.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866129.10.0transcription factor MYB63
TrEMBLA0A2P5CB641e-104A0A2P5CB64_TREOI; MYB transcription factor
STRINGGorai.002G106300.15e-99(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.15e-76myb domain protein 63