PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015865811.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | Nin-like | ||||||||
Protein Properties | Length: 196aa MW: 22777.2 Da PI: 9.0226 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.2 | 5.2e-26 | 87 | 135 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++l+d++k+F+ pi++AAkeL+v+lTvLK++CR+++I+RWPhRkiksl XP_015865811.1 87 GLELNDIQKHFDVPITKAAKELKVGLTVLKKRCRELNIMRWPHRKIKSL 135 6899*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.768 | 67 | 156 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.4E-23 | 88 | 135 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MHNNIPCIEF HNFEDLSTSG FFLDNVAHSS QCEDVMVDEK PQTNMMNSFT HLENLTHEKR 60 GLPSLNDNTE EEKRSNNGDD HRKKCAGLEL NDIQKHFDVP ITKAAKELKV GLTVLKKRCR 120 ELNIMRWPHR KIKSLKSLIN SVKEMGLADE IMMLEEHKRL LEVLPDTELT KKTKKLRQAC 180 FKANYKKRRS LQLAHA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015865811.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015865811.1 | 1e-144 | protein RKD4-like | ||||
Swissprot | Q9LVU8 | 4e-42 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | A0A2P5E6T3 | 1e-69 | A0A2P5E6T3_TREOI; RWP-RK domain containing protein | ||||
STRING | EOY23580 | 1e-62 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 2e-44 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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