PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015865732.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 381aa MW: 42443.2 Da PI: 9.7939

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015865732.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.5	1.2e-09	235	301	24	90
FAR1 24 rngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + i++ ++v ++ ++e ++ k+ +++r+r tr +Ckakl v ++k+gk+++t +++eH+H+l+ XP_015865732.1 235 KAVIIKNDEYVIPNYSQEEVSSIKDAERKRRRGMTRENCKAKLAVVRSKTGKFVMTVFVEEHSHPLS 301 444566777887778888877777899999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1820	4.4E-29	60	228	IPR029058	Alpha/Beta hydrolase fold
SuperFamily	SSF53474	1.97E-28	63	226	IPR029058	Alpha/Beta hydrolase fold
Pfam	PF00561	1.3E-12	65	165	IPR000073	Alpha/beta hydrolase fold-1
Pfam	PF03101	2.6E-7	248	301	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MVNLFTALNP LLRALMKLYG MGAQAVEIQP GKVINFWAPI QTIKNYKNNK KSKKPTTTIN 60 DTEKPVVVFI HGFAGTAVLT WLFQVAALSG NYAVYVPDLL FFGGSITDSP HRSPEFQAEC 120 LARGLKLLGV ERCTVVGCSY GGFVGSKMAE SDPVLVESLV LSNSIVGFSE LQSQEALDRL 180 GFESWTQFLM PNNVEGLKML LGHVIYWRPW FPDWAYKHFL KVMFENREER AELMKAVIIK 240 NDEYVIPNYS QEEVSSIKDA ERKRRRGMTR ENCKAKLAVV RSKTGKFVMT VFVEEHSHPL 300 STPGRVHLLR SHRSMSEAKK SLTLQFSAAN VPTHQQISIL EFEAGDGNAV AMVVRSGGFA 360 RMAMLVAAGA IGNFGKVLSS W

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MVNLFTALNP LLRALMKLYG MGAQAVEIQP GKVINFWAPI QTIKNYKNNK KSKKPTTTIN  60
DTEKPVVVFI HGFAGTAVLT WLFQVAALSG NYAVYVPDLL FFGGSITDSP HRSPEFQAEC  120
LARGLKLLGV ERCTVVGCSY GGFVGSKMAE SDPVLVESLV LSNSIVGFSE LQSQEALDRL  180
GFESWTQFLM PNNVEGLKML LGHVIYWRPW FPDWAYKHFL KVMFENREER AELMKAVIIK  240
NDEYVIPNYS QEEVSSIKDA ERKRRRGMTR ENCKAKLAVV RSKTGKFVMT VFVEEHSHPL  300
STPGRVHLLR SHRSMSEAKK SLTLQFSAAN VPTHQQISIL EFEAGDGNAV AMVVRSGGFA  360
RMAMLVAAGA IGNFGKVLSS W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	265	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015865732.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024923968.1	0.0	uncharacterized protein LOC107403368
TrEMBL	A0A2P5EKF8	1e-110	A0A2P5EKF8_TREOI; Epoxide hydrolase-like
STRING	XP_010088927.1	1e-103	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-13	FAR1-related sequence 5