PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015865728.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 463aa    MW: 51076.1 Da    PI: 6.2532
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015865728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11270317455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k  sKa +L + ++Y++sLq
  XP_015865728.1 270 SHSLAERVRREKISERMKYLQDLVPGC----NKITSKAGMLDEIINYVQSLQ 317
                     8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-17264335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-11264321No hitNo description
Gene3DG3DSA:4.10.280.107.8E-18266334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.139266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-9270317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-11272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MNRALLPEML HCMNNNSAPG NFAGNCTDMT VLERQRDRMK WQHDQIHQQQ NQNLNQNQQS  60
YFSGSELISE VFSSATHQAA DVQGGFQGLV LGCESMLDGQ TVTTRSVKPD PGLENGWPEL  120
GKCTEMPNLG CGSLVNGNHG FQMNNSAISR TASCPPAVPA ANTTDIKAKE AVLHEKLSSA  180
AGKDSFKKRK ADKIPNTKVG VEDDTKEKRI KGNAEEGESK ITEQNSTKNN NSNNRESSAD  240
TSKENSKANS EVQKPDYIHV RARRGQATDS HSLAERVRRE KISERMKYLQ DLVPGCNKIT  300
SKAGMLDEII NYVQSLQRQV EFLSMKLAAV NPRLDFNNDD LFAKEMFPAC SAGFQPIGMS  360
SEMSNSAYLQ FNPSQQLVSC CGMEVGANNN SPDLGLRRTI SAPVSIPELF LDTSCFTQLQ  420
PPATWDTELQ NLFNVEFHQG RSTPFPSQPF AGPIEASNLK MEM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015865728.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865728.10.0transcription factor bHLH49-like isoform X1
SwissprotQ8GY616e-66BH063_ARATH; Transcription factor bHLH63
TrEMBLA0A2P5EKJ10.0A0A2P5EKJ1_TREOI; Basic helix-loop-helix transcription factor
STRINGEMJ010630.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-66cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yang D,Zhao W,Meng Y,Li H,Liu B
    A CIB1-LIKE transcription factor GmCIL10 from soybean positively regulates plant flowering.
    Sci China Life Sci, 2015. 58(3): p. 261-9
    [PMID:25651969]
  3. Katsura Y, et al.
    An optogenetic system for interrogating the temporal dynamics of Akt.
    Sci Rep, 2015. 5: p. 14589
    [PMID:26423353]
  4. Taslimi A, et al.
    Optimized second-generation CRY2-CIB dimerizers and photoactivatable Cre recombinase.
    Nat. Chem. Biol., 2016. 12(6): p. 425-30
    [PMID:27065233]
  5. Liu Q, et al.
    The Blue Light-Dependent Polyubiquitination and Degradation of Arabidopsis Cryptochrome2 Requires Multiple E3 Ubiquitin Ligases.
    Plant Cell Physiol., 2016. 57(10): p. 2175-2186
    [PMID:27516416]
  6. Pathak GP, et al.
    Bidirectional approaches for optogenetic regulation of gene expression in mammalian cells using Arabidopsis cryptochrome 2.
    Nucleic Acids Res., 2017. 45(20): p. e167
    [PMID:28431041]
  7. Duan L, et al.
    Understanding CRY2 interactions for optical control of intracellular signaling.
    Nat Commun, 2017. 8(1): p. 547
    [PMID:28916751]
  8. Quejada JR, et al.
    Optimized light-inducible transcription in mammalian cells using Flavin Kelch-repeat F-box1/GIGANTEA and CRY2/CIB1.
    Nucleic Acids Res., 2017. 45(20): p. e172
    [PMID:29040770]
  9. Liu Y, et al.
    CIB1 and CO interact to mediate CRY2-dependent regulation of flowering.
    EMBO Rep., 2019.
    [PMID:30126927]