PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015865727.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRF
Protein Properties Length: 346aa    MW: 39287.5 Da    PI: 8.4444
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015865727.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.33.7e-2578121144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  XP_015865727.1  78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 121
                     79***************************************997 PP
2QLQ59.11.3e-201247136
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                    s+FTa+Q+q+L++Q+l++Ky+++++PvPp+L+  ++
  XP_015865727.1 12 SSFTATQWQELEHQALIFKYMVSGVPVPPDLIYSVK 47
                    79*****************************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-111248IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.3E-151345IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.8921348IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94178122IPR014977WRC domain
PfamPF088793.2E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MMSANSSARS RSSFTATQWQ ELEHQALIFK YMVSGVPVPP DLIYSVKRSL ESSFSSRLFP  60
HNPIGWGCFE MGFGRKVDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV  120
EISSTATIST TSTISSITCP PNISSMNMNR SLSTSTSTIP TYSSISYPLP SEPLSHLHPQ  180
HNSPLYPFLY SHSSSSRPTG YGLLPENNTT SYFSVKSESY TQPDKDYRYY NGTKESLDEL  240
AFFPESSGNA RSLPETCNHP LLTSSYRSYS QPQFQSYTDN SKEPKQSDSD EQHCFVLGTD  300
FKSPRSIKTE KEPETQKPLH HFFGEWPPKD TDSWLDLASN SRIQSP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015865727.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150426e-63AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865727.10.0growth-regulating factor 5-like
RefseqXP_024930023.10.0growth-regulating factor 5-like
SwissprotQ8L8A64e-69GRF5_ARATH; Growth-regulating factor 5
TrEMBLW9QWS91e-165W9QWS9_9ROSA; Uncharacterized protein
STRINGXP_010086824.11e-166(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-55growth-regulating factor 5