PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015865721.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family AP2
Protein Properties Length: 409aa    MW: 45097.8 Da    PI: 8.8796
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015865721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.69.5e-1685144155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_015865721.1  85 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 144
                     78*******************655454478446*************************98 PP
2AP248.71.8e-15187238155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_015865721.1 187 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 238
                     78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-1285144IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1785154IPR016177DNA-binding domain
CDDcd000185.55E-2285154No hitNo description
SMARTSM003801.1E-2986158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-1686153IPR001471AP2/ERF domain
PROSITE profilePS5103219.17786152IPR001471AP2/ERF domain
PRINTSPR003677.3E-78798IPR001471AP2/ERF domain
PfamPF008473.7E-10187238IPR001471AP2/ERF domain
CDDcd000181.24E-24187248No hitNo description
SuperFamilySSF541715.62E-18187248IPR016177DNA-binding domain
SMARTSM003803.6E-34188252IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-19188246IPR001471AP2/ERF domain
PROSITE profilePS5103219.006188246IPR001471AP2/ERF domain
PRINTSPR003677.3E-7228248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MYKSWLTCQT LPYNSNDQNP SSETNNGCNF QSLSLTMSPS SQNGAGAGAI PAMQVVDNRK  60
RPNGKSLAKE PVPRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQV  120
YLGGYDKEEK AARAYDLAAL KYWGPTTHIN FPISTYEKEL EEMKNMTRQE FVANLRRKSS  180
GFSRGASVYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGTS  240
AVTNFDISRY DVKRICSSST LIASDLAKRS PKDLAAPAPT LDHLNSCPSS TSPQPILAIS  300
SGEPSDELAD MVWNANADDH TQQENSNNDN GVALMATSRS RTSPSNPQTP KCSFGGNNEL  360
GDGGGGDYTH AYFSLQGAKY EDGNGGNEHS RLGNLGLVQQ VPMFALWTE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015865721.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865721.20.0AP2-like ethylene-responsive transcription factor AIL1 isoform X1
SwissprotQ1PFE11e-135AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A061GBL40.0A0A061GBL4_THECC; AP2 domain-containing transcription factor
STRINGEOY272400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-132AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]