PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015865703.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 554aa    MW: 61270.5 Da    PI: 6.41
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015865703.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.81.3e-771675462374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL  cA+a+++g+ +++q+l+  l+elas++gd+++Rlaa+ ++AL ++l++ s s+++++    + ++ +     ++l  f+evsP++ f +
  XP_015865703.1 167 EQLLNPCATAITAGNPNRVQHLIYVLHELASSTGDANHRLAAHGLRALTHHLSSsSASSCSASEGYVSFTSAEPRFFQKSLLKFYEVSPWFAFPN 261
                     689***************************************************44555555555566665555555555555************ PP

            GRAS  96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg........skeeleetgerLakfAeelgvpfe 177
                      +aN+ Il+ +++e    + +Hi+D ++s+G+QWp+Ll+aL+ R+ ++pp +RiT+++   ++              ++  rL  fA++++++++
  XP_015865703.1 262 NIANSSILQILSEEsdqkRNLHILDVGVSHGVQWPTLLEALTRRSgGPPPLVRITVISGTVNDqktetpfsIGPPGDNLSPRLLGFAKSMNINLQ 356
                     *********999888777889************************55666*******987777555555555556688999************** PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfd 269
                     +n l  + l+ l+ + ++ +p+E+l+V+ +++lh+l    +s+++er+e+Lk+++++ Pk v+++e++a++  ns ++F+++f++ ++y ++++d
  XP_015865703.1 357 INRLDNQPLQVLNSQVINSSPDETLIVCAQFRLHHLN---HSSPDERTEFLKALRNMGPKGVILSENNAECscNScGDFATGFSRRVDYLWKFLD 448
                     ***9999*****************************8...67777788******************997664354259***************** PP

            GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                     s+++ +    + r + Er+l++ e+ +v++++ ++    +e +ekW er++ aGF    l+e+a +  ++llrk++ ++++r ee++g + l Wk
  XP_015865703.1 449 STSSAF----KGRESDERRLMEGEAAKVLTNRCEM----NEVKEKWCERMRGAGFVGEILGEDAIDGGRALLRKYDnNWEMRTEEKDGYVGLWWK 535
                     **7775....6666677777777899999877666....999**********************************9999*************** PP

            GRAS 364 drpLvsvSaWr 374
                     ++p+ ++S W+
  XP_015865703.1 536 GQPVSFCSLWK 546
                     **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.475140525IPR005202Transcription factor GRAS
PfamPF035144.6E-75167546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MTIEEPEPNS ASDHILDWLE DSVSFLPFLD DPYNSGEING YHWWDESQDI THDLINARVA  60
SINSPPAIAT DISTAPANPP ISDHVPSPNS SKKRKASDYP IPKTSRNHQN QKMNQGRRIN  120
QPEDGDVVAA QEVVPPPKKS GGNKKGSGKA TGNTCNNGNV KEGRWAEQLL NPCATAITAG  180
NPNRVQHLIY VLHELASSTG DANHRLAAHG LRALTHHLSS SSASSCSASE GYVSFTSAEP  240
RFFQKSLLKF YEVSPWFAFP NNIANSSILQ ILSEESDQKR NLHILDVGVS HGVQWPTLLE  300
ALTRRSGGPP PLVRITVISG TVNDQKTETP FSIGPPGDNL SPRLLGFAKS MNINLQINRL  360
DNQPLQVLNS QVINSSPDET LIVCAQFRLH HLNHSSPDER TEFLKALRNM GPKGVILSEN  420
NAECSCNSCG DFATGFSRRV DYLWKFLDST SSAFKGRESD ERRLMEGEAA KVLTNRCEMN  480
EVKEKWCERM RGAGFVGEIL GEDAIDGGRA LLRKYDNNWE MRTEEKDGYV GLWWKGQPVS  540
FCSLWKLGIK VDDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-3916354684473Protein SHORT-ROOT
5b3h_B2e-3916354630419Protein SHORT-ROOT
5b3h_E2e-3916354630419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015865703.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865703.10.0nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2P5ETQ90.0A0A2P5ETQ9_TREOI; GRAS transcription factor
STRINGXP_010086812.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]