PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015865683.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 522aa MW: 57434.2 Da PI: 9.5863 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_015865683.1 63 FICEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00074 | 139 | 161 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_015865683.1 139 WKCEKCSKKYAVQSDWKAHSKIC 161 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 62 | 85 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.05E-7 | 62 | 85 | No hit | No description |
Pfam | PF12171 | 6.3E-5 | 63 | 85 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.022 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.845 | 63 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 78 | 104 | 134 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.6E-5 | 127 | 160 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.05E-7 | 134 | 159 | No hit | No description |
SMART | SM00355 | 140 | 139 | 159 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MMSEEAVSVP STNRLYVQEP NSNPNPNTTS NPVKKKRNLP GTPDPDAEVI ALSPKSLMAT 60 NRFICEICNK GFQRDQNLQL HRRGHNLPWK LRQRTNKEVR KKVYVCPEKS CVHHDPSRAL 120 GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRKDSF 180 ITHRAFCDAL AEENARFGTV SATNPIFMNG NLNNPQTASR IPQISQIFQP EFAGSEPVGN 240 LSADGQRPRL PLWLDPANSQ LNSNALMGAN STGSLPAELL QTSPMNMFGS SSHSQQWLNK 300 FPDSSFTGGN LSMSSLPRGL KEEEESKRNL SETITFLYPN SQNPQQNPAH MSATALLQKA 360 AQMGSTRSNP AFNGSSAFGL MSLSSSNVSN FNSYNHHIKN DSQKFIRQPN QTENFSELAN 420 TLSSSSPATK VEDGSSSLFS NSILGTSKNL ESLMMPSNSK QGHASVGGLK LLAGTSNESE 480 HSLTRDFLGV GGDASGSFFQ QELAKFASMG SAMDLSQYTR HH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-37 | 135 | 204 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 3e-37 | 135 | 204 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 101 | KLRQRTNKEVRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015865683.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015865682.1 | 0.0 | protein indeterminate-domain 9-like | ||||
Refseq | XP_015865683.1 | 0.0 | protein indeterminate-domain 9-like | ||||
TrEMBL | A0A2I4EJG6 | 0.0 | A0A2I4EJG6_JUGRE; protein indeterminate-domain 9-like | ||||
STRING | cassava4.1_005556m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 1e-105 | C2H2-like zinc finger protein |