PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015865623.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family AP2
Protein Properties Length: 584aa    MW: 64825.1 Da    PI: 6.232
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015865623.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.6e-15260319155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_015865623.1 260 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 319
                     78*******************655454478446*************************98 PP
2AP2483e-15362413155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_015865623.1 362 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 413
                     78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-17260329IPR016177DNA-binding domain
PfamPF008475.5E-12260319IPR001471AP2/ERF domain
CDDcd000188.19E-23260329No hitNo description
SMARTSM003801.1E-29261333IPR001471AP2/ERF domain
PROSITE profilePS5103219.177261327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-16261328IPR001471AP2/ERF domain
PRINTSPR003671.4E-6262273IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18362423IPR016177DNA-binding domain
CDDcd000182.41E-25362423No hitNo description
PfamPF008476.0E-10362413IPR001471AP2/ERF domain
SMARTSM003803.6E-34363427IPR001471AP2/ERF domain
PROSITE profilePS5103219.006363421IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18363421IPR001471AP2/ERF domain
PRINTSPR003671.4E-6403423IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MSNWLGFSLS PHLRIHEDHQ DHGHGVFPPH MSLMPLRSDG SLCVPPDPFR RSHDWRFDSG  60
MGPTNVTNPN EEGPKLEDFL GCCYSSSPPD ETKVYCHEQE EEEEEEADQH QQNQDTKFSK  120
INVNLAPNFN TNGDIETGSD NPTDTSPPLL IQPYNNNHYT DQNHPPQQTL IPNNGMYKSW  180
LTCQTLPYNS NDQNPSSETN NGCNFQSLSL TMSPSSQNGA GAGAIPAMQV VDNRKRPNGK  240
SLAKEPVPRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQVYLGGY  300
DKEEKAARAY DLAALKYWGP TTHINFPIST YEKELEEMKN MTRQEFVANL RRKSSGFSRG  360
ASVYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGTSAVTNF  420
DISRYDVKRI CSSSTLIASD LAKRSPKDLA APAPTLDHLN SCPSSTSPQP ILAISSGEPS  480
DELADMVWNA NADDHTQQEN SNNDNGVALM ATSSSRTSPS NPQTPKCSFG GNNELGDGGG  540
GDYTHAYFSL QGAKYEDGNG GNEHSRLGNL GLVQQVPMFA LWTE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015865623.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865623.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X3
SwissprotQ1PFE11e-134AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2N9G3R70.0A0A2N9G3R7_FAGSY; Uncharacterized protein
STRINGEOY272400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-132AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]