PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc08921.1.g00010.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 91aa MW: 10297.8 Da PI: 10.8721

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc08921.1.g00010.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.5e-08	58	90	1	32
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 +g+W+ eEd l+++++++G+g +W + ++++g Zjn_sc08921.1.g00010.1.am.mk 58 KGPWSLEEDAMLKNYIEEHGTGgNWIALPHKIG 90 79***********************99988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-9	49	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.81E-6	52	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.05	53	91	IPR017930	Myb domain
Pfam	PF00249	2.7E-6	58	90	IPR001005	SANT/Myb domain
CDD	cd00167	1.01E-4	60	88	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MGAGGHPTPC PPNQTHHHST AQSRLPEKRP PRRRERREKK RKTKMGRAPC CDKATVKKGP 60 WSLEEDAMLK NYIEEHGTGG NWIALPHKIG K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	41	RREKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269\|PubMed:24563287}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ354542	2e-60	GQ354542.1 Spartina pectinata microsatellite SPSD003 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973097.1	8e-25	transcription factor MYB36
Swissprot	F4JSU0	2e-21	MYB87_ARATH; Transcription factor MYB87
TrEMBL	K3YMV2	2e-23	K3YMV2_SETIT; Uncharacterized protein
STRING	Si015585m	3e-24	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37780.1	7e-24	myb domain protein 87

Publications ? help Back to Top
Fujiwara S, et al. Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis. Biotechnol. Lett., 2014. 36(5): p. 1049-57 [PMID:24563287]