PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc07956.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 91aa MW: 10280.9 Da PI: 11.067 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 6.9e-09 | 58 | 90 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 +g+W++eEd l+++++++G+g +W + ++++g Zjn_sc07956.1.g00010.1.am.mk 58 KGPWSPEEDAMLKNYIEKHGTGgNWIALPHKIG 90 79***********************99988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-11 | 49 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.41E-7 | 52 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.327 | 53 | 91 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.4E-7 | 58 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-5 | 60 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MGAGGHPTPC PPNQTHHHST AQSRLPEKRP PRRRERREKK RKTKMGRAPC CDKATVKKGP 60 WSPEEDAMLK NYIEKHGTGG NWIALPHKIG K |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 41 | RREKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ354542 | 9e-56 | GQ354542.1 Spartina pectinata microsatellite SPSD003 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973097.1 | 6e-26 | transcription factor MYB36 | ||||
Swissprot | Q9SJL7 | 1e-22 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A426ZFK4 | 9e-26 | A0A426ZFK4_ENSVE; Uncharacterized protein | ||||
TrEMBL | K3YMV2 | 1e-24 | K3YMV2_SETIT; Uncharacterized protein | ||||
STRING | Si015585m | 2e-25 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 5e-25 | MYB family protein |
Publications ? help Back to Top | |||
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