PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc05675.1.g00010.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 271aa    MW: 30059.4 Da    PI: 4.7542
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc05675.1.g00010.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94e-122365246
                                  SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                  g +T+eEd  +  +    G++ W+ Ia+ ++ gRt++++k++w++
  Zjn_sc05675.1.g00010.1.sm.mk 23 GDFTPEEDSVICSLYISIGSR-WSIIAAQLP-GRTDNDVKNYWNT 65
                                  789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.344116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-11228IPR009057Homeodomain-like
SuperFamilySSF466891.37E-21372IPR009057Homeodomain-like
PROSITE profilePS5129421.1021771IPR017930Myb domain
SMARTSM007171.3E-102169IPR001005SANT/Myb domain
PfamPF002492.2E-102365IPR001005SANT/Myb domain
CDDcd001673.06E-72567No hitNo description
Gene3DG3DSA:1.10.10.605.9E-182968IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
LKRCGKSCRL RWLNYLRPNI KHGDFTPEED SVICSLYISI GSRWSIIAAQ LPGRTDNDVK  60
NYWNTKLKKR LLGRRKDRPE AHRPSAAVVA NETAAEMNDG ERALSASAME RIQLCMQLQE  120
LQNPLGAAIQ TPALTTWPAS CRAAIQSNNS FNSNNSAGSS VTVAEPGQCS YVNDHQLNAR  180
LVESAAMDGL ASPSSAENSN VISIEAELQE LLYGEADQQL RAGAIDDGMQ QQQQQGDMDW  240
WSYDQSKPVN CWDFTPEPNA VFQDYASVYD I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1837140108B-MYB
3zqc_A6e-1837135103MYB3
3zqc_D6e-1837135103MYB3
3zqc_G6e-1837135103MYB3
3zqc_J6e-1837135103MYB3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3545423e-49GQ354542.1 Spartina pectinata microsatellite SPSD003 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973097.11e-129transcription factor MYB36
SwissprotQ9FKL21e-52MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A3L6PR861e-128A0A3L6PR86_PANMI; Transcription factor RAX2-like
STRINGSi015585m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-47myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]