PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc04466.1.g00010.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 199aa MW: 21317.8 Da PI: 6.6191

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc04466.1.g00010.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	70.7	3.1e-22	44	122	2	80
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 CaaC++ r kC++dCv+apyf e+ ++fa+++ +FGasnv+k+l++ ++ er +a++ l+y A + P G + + Zjn_sc04466.1.g00010.1.am.mk 44 CAACRHIRWKCEPDCVFAPYFGPEDGEHFAVLEGVFGASNVSKVLADHEPRERVAAIKRLLYLAAENVLAPAGGRWSSV 122 ***********************************************************************99976554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.444	42	143	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-20	44	122	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDPNSSRPRG AASDRSPLLS PSPSPSSSTA GDAMASSSEE AKVCAACRHI RWKCEPDCVF 60 APYFGPEDGE HFAVLEGVFG ASNVSKVLAD HEPRERVAAI KRLLYLAAEN VLAPAGGRWS 120 SVPWGHGEKP SNQQMAEAQQ AAATAQASRE QALMMQYHSR TGFGVPAGHL PSCQATEIQQ 180 QQTAAAVVTN AWHQDMMMR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-16	44	122	12	90	LOB family transfactor Ramosa2.1
5ly0_B	2e-16	44	122	12	90	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36363	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	2e-19	LBD family protein