PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc04161.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 316aa MW: 33360.7 Da PI: 9.7916 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 104.9 | 4.6e-33 | 1 | 48 | 14 | 61 |
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++tkfCy+nny++sqPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ Zjn_sc04161.1.g00010.1.am.mk 1 MDTKFCYFNNYNVSQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNA 48 69*******************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 7.2E-26 | 1 | 47 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-21 | 1 | 46 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 24.456 | 1 | 47 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
MDTKFCYFNN YNVSQPRHFC KNCQRYWTAG GAMRNVPVGA GRRKNKNAVA ASHFLQKVRA 60 AVPVGGDPLK TNGTVLSFGA HGAAPALDLA EQVVGHLKEK MLVPVGNAGN HQSVVDPCSD 120 VSSTRDAKNL SVNGVQHPAN MNGGATMWPY GCAPPSQAYY PSGIAIPIYP AAPGYWGCMV 180 PGGWSPLPWP LQPPTQGLSS PTSTAPSVSS GAGHSLTLGK HAREGDEGRS HGSGKVWAPK 240 TIRIGDADEV AKSSIWSLIG IKGDKQNTDT DGRKNGTVFE PKHEAKSAKQ AMITSSPLLH 300 ANPVALTRSL TFQEGS |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC582399 | 1e-73 | KC582399.1 Sorghum bicolor dof2 protein (dof2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983151.1 | 1e-159 | cyclic dof factor 1 | ||||
TrEMBL | A0A1D8RJ51 | 1e-168 | A0A1D8RJ51_ELECO; Dof transcription factor family protein (Fragment) | ||||
STRING | Si035787m | 1e-159 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39660.2 | 1e-50 | cycling DOF factor 2 |