PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc03741.1.g00010.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 246aa MW: 25718.6 Da PI: 9.4505

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc03741.1.g00010.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.8e-38	17	74	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s Zjn_sc03741.1.g00010.1.am.mk 17 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 74 679***************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	1	66	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	18	72	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.6E-32	18	72	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	20	56	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MAERARLARV PLPEPGTLRC PRCDSTNTKF CYFNNYSLSQ PRHFCKACRR YWTRGGALRN 60 VPVGGGCRRN TKRSSKKSSR QGGVAAAGGA TAASSSSSTT STSTTATTTT TSSAAAAEVL 120 ASMQAQLPQF GLPPAAAAAA LEASLEGYQY HHYLPLQMQQ QFLQQGLQGY HFADGDSGGV 180 FADGFPRGVA SGLLAQLAAV KMEEHNNGGA VAAHEQSYWP SSGGGGNGWP TEFLPGFSSS 240 SSGNVV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001333768.1	1e-101	uncharacterized protein LOC103650524
TrEMBL	A0A0A9I879	1e-102	A0A0A9I879_ARUDO; Uncharacterized protein
STRING	Pavir.Ca02598.1.p	1e-100	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	7e-38	Dof family protein