PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc03649.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 287aa MW: 33456 Da PI: 7.4013 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.4 | 4.6e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPtdeelv++yL+kk++ kk++l +vik+vd+yk+ePwdL++ k+ + +++ewyfFs++dkky+tg+r+nrat Zjn_sc03649.1.g00010.1.am.mk 7 VPPGFRFHPTDEELVDYYLRKKIALKKIDL-DVIKDVDLYKIEPWDLQEkcKIGTeDQNEWYFFSHKDKKYPTGTRTNRAT 86 69****************************.9***************952444443555********************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++g+Wkatg+dk++++ k+ lvg++ktLvfykgrap+g+k+dW+mheyrle Zjn_sc03649.1.g00010.1.am.mk 87 TAGFWKATGRDKPIYV-KNCLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 ****************.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-61 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.423 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MDAFTHVPPG FRFHPTDEEL VDYYLRKKIA LKKIDLDVIK DVDLYKIEPW DLQEKCKIGT 60 EDQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YVKNCLVGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETSEN GMPHEEGWVV CRVFRKRLAT VQRMPSDAPY WFNDHGGFMA 180 PEPSSHHQQN AMVYQRQPSY PCKVELEYHH LLPQEHFLQL PQLESPKLPD LVGSVATLQP 240 CSLTQEHVAS RYMEQELQAE QFYLTAGHAS GSDWRALDKF VASQLIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-50 | 2 | 157 | 10 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00136 | DAP | Transfer from AT1G12260 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT075089 | 1e-174 | KT075089.1 Panicum virgatum secondary wall NAC master switch (SWN6B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448236.1 | 0.0 | NAC domain-containing protein 7 | ||||
Swissprot | Q9FWX2 | 1e-123 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | C5YCY6 | 0.0 | C5YCY6_SORBI; Uncharacterized protein | ||||
STRING | Sb06g023780.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2370 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-103 | NAC 007 |
Publications ? help Back to Top | |||
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