PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc03432.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 197aa MW: 21657.9 Da PI: 10.4148 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.4 | 1e-31 | 19 | 123 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 f+k+ tpsdv+k++rlv+pk++ae+h + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv++ Zjn_sc03432.1.g00010.1.am.mk 19 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrapeaaAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVRE 99 89*************************9998887775555699************************************** PP HT--TT-EEEEEE-SS.SEE..EE CS B3 72 ngLkegDfvvFkldgr.sefelvv 94 +gL++gD++vF+++ +e++l++ Zjn_sc03432.1.g00010.1.am.mk 100 KGLRAGDTIVFSHSTYgEEKQLFI 123 ************986656666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.3E-40 | 15 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.62E-31 | 16 | 127 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.13E-30 | 17 | 113 | No hit | No description |
SMART | SM01019 | 7.5E-24 | 19 | 128 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.184 | 19 | 129 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-29 | 19 | 124 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
GGAGVRAQPT PAWARAPLFE KAVTPSDVGK LNRLVVPKQH AEKHFPLKRA PEAAAAATGK 60 GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLRAGDTIVF SHSTYGEEKQ 120 LFIDCKKTST TEPAVPSPVE KSKETRVAVR LFGVDIAGDV CQKRGRPLEM ALEQGKPFLK 180 KQCVVPHQSP ALGAILL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 5e-51 | 18 | 138 | 13 | 127 | DNA-binding protein RAV1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968155.1 | 1e-111 | AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
Swissprot | Q9AWS0 | 3e-89 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | K3XJ36 | 1e-109 | K3XJ36_SETIT; Uncharacterized protein | ||||
STRING | Si001909m | 1e-110 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-54 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
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