PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc02821.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 241aa MW: 26543.8 Da PI: 10.6697 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 3e-18 | 41 | 85 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ + Zjn_sc02821.1.g00010.1.sm.mk 41 RRTFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 85 6689******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.66E-22 | 24 | 91 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-8 | 24 | 46 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.1 | 36 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-16 | 40 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 41 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 47 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-8 | 52 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MRFMYGFERA CGSRLVRFVF LMYGKSCRLR WFNQLDPRIN RRTFSEEEEE RLLAAHRAYG 60 NKWALIARLF PGRTDNAVKN HWHVLMARRQ REQAGSLRRR KPESSSSSSS TPRPAPRPQR 120 FAPVVVLHHQ HHYGSPPPLP FHAAAGAQEA SRAYSGCGGG AVDSDESAST CTTDLSLGSA 180 GAAPVPYFHQ SYDMAPRAAP SAFAPSPRSA FSAPSPARHR DSSGGDKPAL PFFDFLGVGA 240 T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-20 | 24 | 89 | 42 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086299 | 1e-108 | BT086299.1 Zea mays full-length cDNA clone ZM_BFc0148F09 mRNA, complete cds. | |||
GenBank | EU964855 | 1e-108 | EU964855.1 Zea mays clone 282116 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457638.1 | 1e-84 | transcription factor MYB117 | ||||
Swissprot | Q5NBM8 | 5e-65 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | C5XH76 | 3e-83 | C5XH76_SORBI; Uncharacterized protein | ||||
STRING | Sb03g010960.1 | 5e-84 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 8e-38 | myb domain protein 56 |