PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc02644.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 260aa MW: 28149.4 Da PI: 6.5201 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.2 | 8.6e-25 | 82 | 177 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeF 68 f+k+ tpsdv++++rlv+pk +ae+h + + + ++ l +ed + ++W+++++y+ +s++yvlt+GW++F Zjn_sc02644.1.g00010.1.am.mk 82 FEKAVTPSDVGRLNRLVVPKVHAEKHfpplsekdDDDDAAPVLLAFEDADPnggngKVWRFRFSYWSSSQSYVLTRGWSRF 162 89****************************99996667899999999965455888************************* PP HHHHT--TT-EEEEE CS B3 69 vkangLkegDfvvFk 83 v+++gL +gD+++F+ Zjn_sc02644.1.g00010.1.am.mk 163 VREKGLAAGDTITFS 177 **************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.545 | 1 | 25 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-6 | 2 | 25 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-33 | 74 | 179 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.94E-27 | 77 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.91E-25 | 80 | 176 | No hit | No description |
PROSITE profile | PS50863 | 12.619 | 82 | 190 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-15 | 82 | 191 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-21 | 82 | 177 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
EEAAARAFDV AARRFRGHDA AVNFPGPADA DELAFLAVRP KAEVVDMLRK HTYNDELRQG 60 LRSVSGGGGV CEADPVPRTP LFEKAVTPSD VGRLNRLVVP KVHAEKHFPP LSEKDDDDDA 120 APVLLAFEDA DPNGGNGKVW RFRFSYWSSS QSYVLTRGWS RFVREKGLAA GDTITFSQAA 180 TPPTPTTTSA DGEAYTARRL FIECRKRKRT RTDSDGSVVV DGCPDHGGDA RVVRLFGANI 240 AAAIGGHAFV EVEPQLQVGS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-38 | 81 | 179 | 13 | 103 | DNA-binding protein RAV1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806570.1 | 4e-93 | AP2/ERF and B3 domain-containing protein Os01g0141000-like | ||||
Swissprot | Q9AWS7 | 3e-65 | Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | A0A2T7E8E6 | 5e-97 | A0A2T7E8E6_9POAL; Uncharacterized protein | ||||
STRING | Sb09g004140.1 | 1e-74 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13260.1 | 4e-54 | related to ABI3/VP1 1 |