PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc02442.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 188aa MW: 21070.3 Da PI: 11.7124 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 30.6 | 8.9e-10 | 7 | 68 | 1 | 66 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 +Wt +e+laL++a++ + +++r+ l ++W++v+ + ++++ qC++k e+l++r + ++ Zjn_sc02442.1.g00010.1.am.mk 7 CWTPDETLALVRAYTARRLAVGREHLTSADWAAVATAAP----SKTARQCRHKVEKLRRRLRSSRR 68 8*********************************99865....689**************998765 PP | |||||||
2 | Myb_DNA-binding | 21.7 | 4.7e-07 | 7 | 59 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.........tWktIartmgkgRtlkqcksrwqky 47 WT++E + lv+a + +W+++a + +t+ qc+++ k+ Zjn_sc02442.1.g00010.1.am.mk 7 CWTPDETLALVRAYTARRLAvgrehltsaDWAAVATAAP-SKTARQCRHKVEKL 59 6************99877668899***************.*********98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.24E-5 | 5 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 5.7E-8 | 6 | 68 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-5 | 8 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.504 | 8 | 60 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
RRVPPPCWTP DETLALVRAY TARRLAVGRE HLTSADWAAV ATAAPSKTAR QCRHKVEKLR 60 RRLRSSRRRP CPLLDAIDLL DGPSPPIMSR VQSPSPSRSP SPPPAVSLPS PCSPPASPPR 120 KRRRDDYGVS DLVGALRAIG EGFLRAEERR MEAARETQRM RMDMALRHLD AQRRLMEVFT 180 GRIVDALD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 63 | KLRRRLR |
2 | 58 | 64 | LRRRLRS |
3 | 119 | 123 | RKRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001144478.1 | 3e-77 | uncharacterized protein LOC100277445 | ||||
TrEMBL | B6TUK0 | 7e-76 | B6TUK0_MAIZE; FRIGIDA interacting protein 2 | ||||
STRING | GRMZM2G320827_P01 | 1e-76 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13911 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 2e-06 | Trihelix family protein |