PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc02086.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TALE | ||||||||
Protein Properties | Length: 164aa MW: 18667 Da PI: 9.5264 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.9 | 4.7e-10 | 94 | 127 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ Zjn_sc02086.1.g00010.1.sm.mk 94 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 127 59*****************************985 PP | |||||||
2 | ELK | 34.3 | 5.2e-12 | 47 | 68 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ Zjn_sc02086.1.g00010.1.sm.mk 47 ELKEMLLKKYSGCLSRLRSEFL 68 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 6.1E-9 | 47 | 68 | IPR005539 | ELK domain |
SMART | SM01188 | 3.6E-6 | 47 | 68 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.423 | 47 | 67 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.438 | 67 | 130 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-14 | 69 | 134 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.19E-20 | 69 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.29E-13 | 70 | 131 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 73 | 132 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.9E-17 | 87 | 126 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 105 | 128 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
LKKGLWPPSY GLNYITAGSS EDEPYSGDTD ATELGQQEHS SRLADRELKE MLLKKYSGCL 60 SRLRSEFLKK RTKGKLPKDA RSALMDWWNT HYRWPYPTEE DKVRLAAMTG LDPKQINNWF 120 INQRKRHWKP SEDMRFALME GVTGGGGSSS GTTTLYFDTG TIGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF457118 | 1e-133 | AF457118.1 Zea mays knotted1-like homeodomain protein liguleless4a (lg4a) mRNA, complete cds. | |||
GenBank | BT085252 | 1e-133 | BT085252.1 Zea mays full-length cDNA clone ZM_BFb0343E20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020397912.1 | 1e-83 | liguleless 4 isoform X1 | ||||
Swissprot | A2Y007 | 1e-83 | KNOSA_ORYSI; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q7GDL5 | 1e-83 | KNOSA_ORYSJ; Homeobox protein knotted-1-like 10 | ||||
TrEMBL | A0A0E0KY08 | 2e-83 | A0A0E0KY08_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G01700.4 | 3e-84 | (Oryza punctata) | ||||
STRING | GRMZM2G094241_P01 | 8e-83 | (Zea mays) | ||||
STRING | LPERR05G01890.1 | 9e-83 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.2 | 7e-44 | KNOTTED1-like homeobox gene 6 |