PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc01071.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 179aa MW: 20987.3 Da PI: 8.3623 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00092 | 31 | 48 | 3 | 20 |
ETTTTEEESSHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHi 20 Cp C+k+F ++ ++ +H Zjn_sc01071.1.g00010.1.sm.mk 31 CPVCDKVFLDSGSFISHV 48 ****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04780 | 1.4E-9 | 13 | 83 | IPR006865 | Domain of unknown function DUF629 |
Pfam | PF04780 | 4.8E-6 | 88 | 160 | IPR006865 | Domain of unknown function DUF629 |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MVHCRRSGSV HDLIDAVEFV KATGAWAYWL CPVCDKVFLD SGSFISHVEG EYIHEIQDFQ 60 PLMPKRVSLD AHEFYLSSRW TPFENGEEDK ERRKDLDKIR EAFTNFCTMK ALPARLVDKL 120 IKFARSKSKK PLPYCIPSCI TSLDQKELKR LMEPLNQLRE LLYKEWVYLR DLADKGKNK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791202.1 | 7e-73 | uncharacterized protein LOC112872313 | ||||
TrEMBL | A0A1E5WGI8 | 7e-74 | A0A1E5WGI8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J33914.1.p | 3e-73 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14897 | 2 | 2 |