PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc01013.1.g00010.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 271aa MW: 29835.3 Da PI: 8.1373

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc01013.1.g00010.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	68.7	1.2e-21	151	252	218	321
GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 ++++ + d++L+++ +l Pk++ ++eq a hn+e + +r+ +a++yy +lf lea + + r vE++ll+++++n++ Zjn_sc01013.1.g00010.1.am.mk 151 HEIT-KADALLRVLCDLTPKLMMLTEQYAYHNGEVLSNRVRNAFDYYEVLFRDLEAA-GGDPMMRGLVEHMLLKEKLMNII 229 3444.489********************************************999.7888*************** PP GRAS 299 acegaerrerhetlekWrerlee 321 +cega++rerhe+le W r+++ Zjn_sc01013.1.g00010.1.am.mk 230 SCEGAQHRERHENLEYWLPRMMR 252 ***************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.336	1	271	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-19	151	252	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MSLNQSRGKG KAEVAMEDDA EQEIWLVKKK VDHQGSGPSC AGEESSSLAT APAQPPANLG 60 GDSAGGGCAS SAALQYLSSV MSFAGDVALQ RVVVAFAEAL ERRAMQLLPG LAWSLQLKVL 120 LPPPTAAYTK DGTRPCKKRK NMDTTTAITS HEITKADALL RVLCDLTPKL MMLTEQYAYH 180 NGEVLSNRVR NAFDYYEVLF RDLEAAGGDP MMRGLVEHML LKEKLMNIIS CEGAQHRERH 240 ENLEYWLPRM MRSRKSRAWH TKCQVMAASG H

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36328	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	5e-16	scarecrow-like 3