PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00351.1.g00040.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ARF | ||||||||
Protein Properties | Length: 627aa MW: 68480.1 Da PI: 8.6204 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.3 | 7.8e-15 | 128 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+ +lt+sd+++s l +p +a+++ +++ e +t++ +d +g W+++++yrk + r+ lt+ W+ Fv ++ Zjn_sc00351.1.g00040.1.sm.mk 128 FVLTLTQSDATSSV-LLVPHYCADTIfpplnyvhDLP-E--QTIVAKDVHGTFWKFRHNYRKIPPRHQLTTWWSTFVGKKR 204 77889999999997.77799999888**999875544.3..48************************************** PP --TT-EEEEEE-SSSEE..EEEEE-S CS B3 74 LkegDfvvFkldgrsefelvvkvfrk 99 L gD++vF + +++ l+++++r+ Zjn_sc00351.1.g00040.1.sm.mk 205 LVNGDSIVFL--RGDGGYLHIGIRRA 228 **********..3488999****996 PP | |||||||
2 | Auxin_resp | 99.3 | 5.4e-33 | 250 | 333 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80 aa+ as +++Fev ++Pr +eF+v+++ v++a++v++s+GmRfk+afet+dss++ +Gtv+gv+ +dpvrWp+S+Wr Zjn_sc00351.1.g00040.1.sm.mk 250 AARLASAGQPFEVAFYPRLNMPEFCVRAKVVHEAMRVPWSPGMRFKIAFETNDSSKIIPvMGTVAGVQVADPVRWPQSPWR 330 68899***************************************************9877********************* PP Auxin_resp 81 sLk 83 +L+ Zjn_sc00351.1.g00040.1.sm.mk 331 LLQ 333 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-25 | 122 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.8E-20 | 125 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.996 | 127 | 229 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.42E-14 | 128 | 227 | No hit | No description |
SMART | SM01019 | 5.6E-11 | 128 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-12 | 128 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.1E-28 | 250 | 333 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 12.649 | 563 | 627 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MASGSLPMIT SGDQQAPAAA GVERCVDRHL WLVCAGRMCT VPPVGEVVDY FPQGHAEHAA 60 GLSTTVDLSA ARVPARVLCR VTAVRYMADP DTDEVFARIL LIPLPDGVSG AGLDDDVAVD 120 ESTKPDWFVL TLTQSDATSS VLLVPHYCAD TIFPPLNYVH DLPEQTIVAK DVHGTFWKFR 180 HNYRKIPPRH QLTTWWSTFV GKKRLVNGDS IVFLRGDGGY LHIGIRRAKR GFCGAGNGGA 240 TVRADDVIEA ARLASAGQPF EVAFYPRLNM PEFCVRAKVV HEAMRVPWSP GMRFKIAFET 300 NDSSKIIPVM GTVAGVQVAD PVRWPQSPWR LLQVTWDKPE TLRNVERVSP WLVEVVSSMP 360 GPLFMPPRKK PRSVYPEFPF DGQLLNPAFP HNPLPHGQPP GPDFLHTYPS LFPFPGSSAL 420 AAIQGARHAP PVPSLLSDVL RNLQWRLPRP APRRPTTIPT PARINPDLTT GANNKKPEKP 480 AGIRLFGQTI LTEEQMSRGG SSGATSPAAA RTSSLNWNAK KSANVSECLG SGVIQNSSRD 540 KASSERQWSG DGSSHLSDLG LGLGQCEVFM ESDTVGRNLD LSPLTSFDEL YHRLSEMFGI 600 ESAALRSRVI YRGATGAVKR VGDESFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 4e-61 | 28 | 358 | 21 | 357 | Auxin response factor 1 |
4ldy_B | 4e-61 | 28 | 358 | 21 | 357 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 366 | 372 | PRKKPRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953169.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q6K223 | 0.0 | ARFH_ORYSJ; Auxin response factor 8 | ||||
TrEMBL | K3YQL6 | 0.0 | K3YQL6_SETIT; Auxin response factor | ||||
STRING | Si016509m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-147 | auxin response factor 16 |