PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00351.1.g00040.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 627aa    MW: 68480.1 Da    PI: 8.6204
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00351.1.g00040.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.8e-15128228199
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                   f+ +lt+sd+++s  l +p  +a+++        +++ e  +t++ +d +g  W+++++yrk + r+ lt+ W+ Fv  ++
  Zjn_sc00351.1.g00040.1.sm.mk 128 FVLTLTQSDATSSV-LLVPHYCADTIfpplnyvhDLP-E--QTIVAKDVHGTFWKFRHNYRKIPPRHQLTTWWSTFVGKKR 204
                                   77889999999997.77799999888**999875544.3..48************************************** PP

                                   --TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  74 LkegDfvvFkldgrsefelvvkvfrk 99 
                                   L  gD++vF   + +++ l+++++r+
  Zjn_sc00351.1.g00040.1.sm.mk 205 LVNGDSIVFL--RGDGGYLHIGIRRA 228
                                   **********..3488999****996 PP

2Auxin_resp99.35.4e-33250333183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80 
                                   aa+ as +++Fev ++Pr   +eF+v+++ v++a++v++s+GmRfk+afet+dss++   +Gtv+gv+ +dpvrWp+S+Wr
  Zjn_sc00351.1.g00040.1.sm.mk 250 AARLASAGQPFEVAFYPRLNMPEFCVRAKVVHEAMRVPWSPGMRFKIAFETNDSSKIIPvMGTVAGVQVADPVRWPQSPWR 330
                                   68899***************************************************9877********************* PP

                    Auxin_resp  81 sLk 83 
                                   +L+
  Zjn_sc00351.1.g00040.1.sm.mk 331 LLQ 333
                                   *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-25122230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-20125229IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.996127229IPR003340B3 DNA binding domain
CDDcd100172.42E-14128227No hitNo description
SMARTSM010195.6E-11128229IPR003340B3 DNA binding domain
PfamPF023622.4E-12128228IPR003340B3 DNA binding domain
PfamPF065073.1E-28250333IPR010525Auxin response factor
PROSITE profilePS5174512.649563627IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MASGSLPMIT SGDQQAPAAA GVERCVDRHL WLVCAGRMCT VPPVGEVVDY FPQGHAEHAA  60
GLSTTVDLSA ARVPARVLCR VTAVRYMADP DTDEVFARIL LIPLPDGVSG AGLDDDVAVD  120
ESTKPDWFVL TLTQSDATSS VLLVPHYCAD TIFPPLNYVH DLPEQTIVAK DVHGTFWKFR  180
HNYRKIPPRH QLTTWWSTFV GKKRLVNGDS IVFLRGDGGY LHIGIRRAKR GFCGAGNGGA  240
TVRADDVIEA ARLASAGQPF EVAFYPRLNM PEFCVRAKVV HEAMRVPWSP GMRFKIAFET  300
NDSSKIIPVM GTVAGVQVAD PVRWPQSPWR LLQVTWDKPE TLRNVERVSP WLVEVVSSMP  360
GPLFMPPRKK PRSVYPEFPF DGQLLNPAFP HNPLPHGQPP GPDFLHTYPS LFPFPGSSAL  420
AAIQGARHAP PVPSLLSDVL RNLQWRLPRP APRRPTTIPT PARINPDLTT GANNKKPEKP  480
AGIRLFGQTI LTEEQMSRGG SSGATSPAAA RTSSLNWNAK KSANVSECLG SGVIQNSSRD  540
KASSERQWSG DGSSHLSDLG LGLGQCEVFM ESDTVGRNLD LSPLTSFDEL YHRLSEMFGI  600
ESAALRSRVI YRGATGAVKR VGDESFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A4e-612835821357Auxin response factor 1
4ldy_B4e-612835821357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366372PRKKPRS
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953169.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLK3YQL60.0K3YQL6_SETIT; Auxin response factor
STRINGSi016509m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-147auxin response factor 16