PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00254.1.g00100.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 143aa MW: 15970 Da PI: 11.7599 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 110.5 | 7.8e-35 | 20 | 73 | 5 | 58 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 +cp+C s++tkfCyy ny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ Zjn_sc00254.1.g00100.1.sm.mk 20 GEQCPQCASHDTKFCYYKNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKS 73 579*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 26.235 | 21 | 75 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.5E-30 | 21 | 73 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-21 | 22 | 68 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 23 | 59 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MQEVEHTAVT EANGNNGARG EQCPQCASHD TKFCYYKNYN TSQPRHFCRA CRRYWTLGGS 60 LRNVPIGGST RKSPLLAHPV GAAGEQAPRR LWRRQRGGAS HGPPQLAVRA RRCGAGAGGA 120 QRFRLRAWPR ASNAEWRGRC LRW |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582406 | 1e-68 | KC582406.1 Sorghum bicolor dof9 protein (dof9) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008644658.1 | 2e-37 | dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A1D6GLQ1 | 4e-36 | A0A1D6GLQ1_MAIZE; Dof zinc finger protein DOF1.6 | ||||
STRING | GRMZM2G061292_P01 | 7e-37 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 6e-26 | DOF zinc finger protein 1 |