PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00233.1.g00040.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 554aa MW: 60918.4 Da PI: 4.0171 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 59.1 | 1.2e-18 | 17 | 86 | 2 | 71 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearard 71 CaaC+ +rrkC++dCv+ p f e+ ++f +v ++FGa+ v+ +l++l ++er +a++ lv +A +r+ Zjn_sc00233.1.g00040.1.sm.mk 17 CAACRQMRRKCVPDCVFVPFFGPEDGERFYAVDRIFGAHYVSDMLEDLAPHERWNAVEMLVHQATLGMRN 86 ****************************************************************987776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.453 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.6E-18 | 17 | 88 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 554 aa Download sequence Send to blast |
MSSSSAAPET EPQSQDCAAC RQMRRKCVPD CVFVPFFGPE DGERFYAVDR IFGAHYVSDM 60 LEDLAPHERW NAVEMLVHQA TLGMRNQQMA EVQQPQRADG RVYGNQQTVP QVAGSQNSAA 120 VDQDQLRMKM MAQVRRNAAA ARKAFFPQLA QLQQMRAAAE VAEVAMNPDM MMWQATAAPT 180 QQMYQAEAQQ LPASTLGGAT QRDMMMQQAT AAAAVQNYPY SVQQYPEMGL EQQHQQNQQM 240 AQAANLATAA EAAMDQEILE YLMMPAPLPA AAAATEQSNY QLGQQQLPEP EKEHALELPA 300 ADEFGWDEDL MTRQFTEAVA TAGVTTDEYL MMTTTMVELQ DVAGGQQNGH DHTELYANMG 360 QGHQLGQQLP DPETEHALEV PAADEFRWDE DLMTRQMVEA AATAGVTADE YLMMTATMVE 420 LQDVAGGQQN GHDHAEQYSN MGHGHQLGQQ LPDPESTEQA LELPAADEFG WDEDLMTRQM 480 AEAAATAGVT ADEYLMMTTT TLELMDVPGG QQNGHDHAER YANMGRGNTD LQRNGGGAEV 540 QSPDVAAYFT NDDM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-16 | 6 | 80 | 1 | 75 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-16 | 6 | 80 | 1 | 75 | LOB family transfactor Ramosa2.1 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP36282 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-18 | LOB domain-containing protein 25 |