PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00233.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 23771.8 Da PI: 6.5094 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 53.2 | 8.4e-17 | 11 | 81 | 2 | 72 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardP 72 C aC+++rrkC++dCv+ap+f ++ ++fa++ + FGas v++ l+ ++ er ++++ lv A a + P Zjn_sc00233.1.g00010.1.sm.mk 11 CVACRHMRRKCEPDCVFAPHFGPDDGERFAALDRAFGASFVSQQLAGREPRERAATIEMLVRIAIASVPRP 81 9******************************************************9999988777776666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.347 | 9 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.4E-16 | 11 | 81 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MASSEEAEKV CVACRHMRRK CEPDCVFAPH FGPDDGERFA ALDRAFGASF VSQQLAGREP 60 RERAATIEML VRIAIASVPR PAGVKAQQEA AAAQFSREQA LIRQYHTGTG FGVPAYQSAE 120 YQAMIASHQE MLMRNAGALY RPLELEELLQ GAAAKQKSTL QPVAEVQQQR TAAEEVARHH 180 DMVMQQAAAA QNYQALGLEQ QHQNRQLAED VMHQT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65620.4 | 4e-15 | LBD family protein |