PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00231.1.g00050.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 133aa MW: 13811.9 Da PI: 6.9398 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 22.7 | 1e-07 | 62 | 108 | 2 | 48 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteA 48 +++++ c+ a++ g+ a+a+L+ +s asp gd ++R+a+ f+eA Zjn_sc00231.1.g00050.1.am.mk 62 KHVIMYCVAALDMGNVMTASAALQSISSVASPLGDHLKRVAFTFAEA 108 7899******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 3.6E-5 | 62 | 108 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MNPEGSNNNK GKAVVVVKEE PSSLPMLVDA ASPAVPPPLP AAPMANIPGP HQYGENRSLF 60 IKHVIMYCVA ALDMGNVMTA SAALQSISSV ASPLGDHLKR VAFTFAEAKI APGTVAHCLL 120 SGDSSQYVDT RGT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 3e-08 | scarecrow-like 3 |