PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00228.1.g00060.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 263aa    MW: 28672 Da    PI: 11.331
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00228.1.g00060.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS65.11.4e-2011721181172
                          GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skee 157
                                    +l+++ sP++ ++  +aN aI+eav  ++++H +Dfd+s  +Q +aL q La+R  +  sl++T++ +p+s     ++ +
  Zjn_sc00228.1.g00060.1.am.mk 117 SQLLHDRSPWFHLALHAANVAIVEAVGDHRAIHLVDFDVST-TQHAALVQYLADRHVPGTSLKVTAITDPSSPfaqsQTAT 196
                                   57899**********************************86.8**************************998889999999 PP

                          GRAS 158 leetgerLakfAeel 172
                                   l +++erL+k+A+++
  Zjn_sc00228.1.g00060.1.am.mk 197 LPAVEERLKKLADRV 211
                                   ************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.9921263IPR005202Transcription factor GRAS
PfamPF035144.8E-18117211IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MNTIASAPPP IYSLHSVTDQ NIGKSKTDPQ RHLLHLLPRI DRRTLACLPA DLPAAAQLSR  60
RRPGSLPCIP AASRCCQVLI PTPALQSSSL QRRRRPGPIC AVTHGAGLLR RRRVLGSQLL  120
HDRSPWFHLA LHAANVAIVE AVGDHRAIHL VDFDVSTTQH AALVQYLADR HVPGTSLKVT  180
AITDPSSPFA QSQTATLPAV EERLKKLADR VSNAGLDDGG SQGRGRRELL QHPCSAQSQK  240
GTRRQRQVVA VPFFFFLIVG KTD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192112RRRPGPICAVTHGAGLLRRRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2492236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-09scarecrow-like 5