PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00222.1.g00130.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 741aa    MW: 79521.9 Da    PI: 7.1549
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00222.1.g00130.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.32.4e-2986170187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e+g++rs+k+Ckek+en++k++k++ke++ +r  ++ +t+++
  Zjn_sc00222.1.g00130.1.am.mk  86 RWPRQETLALLKIRQDMDAAFRDATLKGPLWEQVSRKLAEQGYNRSAKKCKEKFENVHKYHKRTKESRAGR--NAGKTYRF 164
                                   8********************************************************************98..45567*** PP

                      trihelix  82 fdqlea 87 
                                   f+qlea
  Zjn_sc00222.1.g00130.1.am.mk 165 FTQLEA 170
                                   ****85 PP
2trihelix108.83.6e-34466551187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW+k ev+aLi++r+++++r+++   k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy
  Zjn_sc00222.1.g00130.1.am.mk 466 RWPKAEVHALIQLRSNLDTRYQEVGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPY 545
                                   8*********************************************************************8.99******* PP

                      trihelix  82 fdqlea 87 
                                   f+qlea
  Zjn_sc00222.1.g00130.1.am.mk 546 FHQLEA 551
                                   ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.96979143IPR017877Myb-like domain
SMARTSM007175.3E-483145IPR001005SANT/Myb domain
CDDcd122032.01E-2685150No hitNo description
PfamPF138377.5E-2085171No hitNo description
SMARTSM007170.0092463525IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-4464522IPR009057Homeodomain-like
CDDcd122037.29E-30465530No hitNo description
PfamPF138373.0E-23465552No hitNo description
PROSITE profilePS500907.155465523IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MQQQQHGGAG GAAQQFGVQQ VEMPPPLSPP GQRISVAEAP SPISSRPPAQ HQLDELGTVA  60
GGFDAEGLAA AAAGEDGARG GSAGNRWPRQ ETLALLKIRQ DMDAAFRDAT LKGPLWEQVS  120
RKLAEQGYNR SAKKCKEKFE NVHKYHKRTK ESRAGRNAGK TYRFFTQLEA LHHATGSPAS  180
AAPSPVTSFA PPSTAVGVSG PLPMWAPAEP PPSVSAGLGG VGMPTMGNMS FSTSNTEDYS  240
DDEDSDDEGT QELGEGADER GKRKRLSEGS AAVGGSGRRK MMRFFEGMMK QVMERQEAMH  300
QRFLEAIEKR EQERMIREEA WRRQEMARLA REQEILAQER AMAASRDAAV LSFIQKVTGQ  360
TIPMPSIAAP AINIMPPPSS HPPPQPHPTA AASASPAPTP SQPPALQTPP PQPQPSPQSQ  420
KSQQPTTPHA PPTQQQSSDF VMTPADAPHA DTSGHDGSGG GATSSRWPKA EVHALIQLRS  480
NLDTRYQEVG PKGPLWEEIS AGMRRLGYNR NAKRCKEKWE NINKYFKKVK ESNKKRPEDS  540
KTCPYFHQLE ALYRNKALSS SSAGAAMHAH ASSAPQEAVT VTAATPICQT PPPPQPSQQS  600
SQHAAKSGHG NGGSVASEHG GSGSGSMQMQ TTNGSVAAAK KRRQQPQVAS SYNRIDGGAD  660
SDNMDEDDDY DDDDDEDDVD GNKMQYEILF QHHHQQQQQQ PQQHQNVVRP NSGGGGGNPT  720
GTAAPTSTAA TTTGSFLGMV Q
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612051e-129BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794483.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025794484.10.0trihelix transcription factor GTL1-like isoform X1
SwissprotQ391177e-64TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2S3IKR80.0A0A2S3IKR8_9POAL; Uncharacterized protein
STRINGGRMZM2G414159_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-53Trihelix family protein