PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00216.1.g00120.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 636aa MW: 70127.9 Da PI: 6.6484

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00216.1.g00120.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	51.9	2.2e-16	11	81	2	72
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardP 72 C aC+++rrkC++dCv+ap+f ++ ++f ++ + FGas v++ l++ ++ er +a++ lv A a + P Zjn_sc00216.1.g00120.1.am.mk 11 CVACRHMRRKCEPDCVFAPHFGPDDGERFGALDRAFGASFVSQQLADREPRERAAAIEMLVRIAIASVPRP 81 9********************************************************99998887777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.63	9	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-15	11	81	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence Send to blast
MASSEEAEKV CVACRHMRRK CEPDCVFAPH FGPDDGERFG ALDRAFGASF VSQQLADREP 60 RERAAAIEML VRIAIASVPR PAGVKAQQEA AAAQISREQA LIRQYHTGTG FGVPAYQSAE 120 YQAMIASHQE MLMRNAGAVY QPLELEELLQ GAAAKQKSTL QPVAELQQQR TAAEEVARHH 180 DMVMRQAAAA QNYQALGLEQ QREGAAAKQK SILQPVAELQ QQRTAADVVA RYHDMVMRQA 240 AAAVQNYQAL GLEQQREGAA AKQKSMLQPV AELQQQRTAA DEVARYHDMM MRQAAAAAVQ 300 NYQALGLEQQ RESAAAKQKS MLQPVAELQQ ERTAADEVAR HHAMMMRQAA AAQNYLGIEQ 360 QREGAAAKQK SMLQPVAELQ QQRTAAEEVT RLHDKMMQQA AAAQNYQALG LEQQHQNRQL 420 AEGVMHQTEL TAEAAKRATA EEAAGVREVD MVLQSLRQAA VEEQYMDNYL RAVMLETVAD 480 GQQQQHPLHH DQAGQNAAML QQKLAQGIVN TQKIDQQIAI AQQHWEKKLT MMQQAAANAP 540 AMRGEQPQPQ RQTRNAQFQK ESSLPPLPTQ PRHAGGASGA RTMPFLPGRS ADSEAFLVQP 600 SLPSLPPSLA DTPRQQQNDG GNEDLSVDPT LRLWNH

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence Send to blast

MASSEEAEKV CVACRHMRRK CEPDCVFAPH FGPDDGERFG ALDRAFGASF VSQQLADREP  60
RERAAAIEML VRIAIASVPR PAGVKAQQEA AAAQISREQA LIRQYHTGTG FGVPAYQSAE  120
YQAMIASHQE MLMRNAGAVY QPLELEELLQ GAAAKQKSTL QPVAELQQQR TAAEEVARHH  180
DMVMRQAAAA QNYQALGLEQ QREGAAAKQK SILQPVAELQ QQRTAADVVA RYHDMVMRQA  240
AAAVQNYQAL GLEQQREGAA AKQKSMLQPV AELQQQRTAA DEVARYHDMM MRQAAAAAVQ  300
NYQALGLEQQ RESAAAKQKS MLQPVAELQQ ERTAADEVAR HHAMMMRQAA AAQNYLGIEQ  360
QREGAAAKQK SMLQPVAELQ QQRTAAEEVT RLHDKMMQQA AAAQNYQALG LEQQHQNRQL  420
AEGVMHQTEL TAEAAKRATA EEAAGVREVD MVLQSLRQAA VEEQYMDNYL RAVMLETVAD  480
GQQQQHPLHH DQAGQNAAML QQKLAQGIVN TQKIDQQIAI AQQHWEKKLT MMQQAAANAP  540
AMRGEQPQPQ RQTRNAQFQK ESSLPPLPTQ PRHAGGASGA RTMPFLPGRS ADSEAFLVQP  600
SLPSLPPSLA DTPRQQQNDG GNEDLSVDPT LRLWNH

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36265	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	1e-14	LBD family protein