PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00209.1.g00260.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 427aa    MW: 46846.6 Da    PI: 8.098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00209.1.g00260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07156187132
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg 32 
                                   +g+WT+eEd +lv  v+++G ++W+  a+  g
  Zjn_sc00209.1.g00260.1.am.mk 156 KGPWTEEEDAQLVWFVRLFGERRWDFLAKVSG 187
                                   79***********************9999877 PP
2Myb_DNA-binding48.61.9e-15236279146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rgr T++E+ l++++++++G++ W++Iar ++ gRt++++k++w++
  Zjn_sc00209.1.g00260.1.am.mk 236 RGRITADEERLILELHAKWGSR-WSRIARSLP-GRTDNEIKNFWRT 279
                                   899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.454151230IPR017877Myb-like domain
SuperFamilySSF466892.23E-6154185IPR009057Homeodomain-like
SMARTSM007176.9E-10155232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-18157237IPR009057Homeodomain-like
CDDcd001674.93E-7158230No hitNo description
SuperFamilySSF466892.63E-19216285IPR009057Homeodomain-like
PROSITE profilePS5129422.433231285IPR017930Myb domain
SMARTSM007171.0E-13235283IPR001005SANT/Myb domain
PfamPF002491.2E-13236279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-22238283IPR009057Homeodomain-like
CDDcd001677.13E-11240279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MVISRQDKAG KLDDYPSKWV YRPIQHGAVL TAQARVECLS IYPATSNQEE IDVKMERRSH  60
LPLSSSSRSL VKLGLCLCPG PNQRQQPLKP GQVVIDRSVV VIQGRSGSEE KMDQSIASAA  120
MCSSSKNNSK KQQGGGEQQK SGGSSTTAAM AAAMRKGPWT EEEDAQLVWF VRLFGERRWD  180
FLAKVSGLRG GGCIPMHASG GLVGCVHEDF RNGRLKRTGK SCRLRWVNYL HPGLRRGRIT  240
ADEERLILEL HAKWGSRWSR IARSLPGRTD NEIKNFWRTR TRKQKALGER PQCKDDDKST  300
TMTASPSSST VTSAFFSGGG AATSSSTVTE SALQGSSGGD DEAELDEAST TATATATQHQ  360
QECYTMDQLL LWNEMAAASY SMDSWGIGHA AAPAEPASMP SPLWELCVDN SLWMIDDEEY  420
YKTLDAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-221562844104C-Myb DNA-Binding Domain
1msf_C2e-221562844104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281941e-86KJ728194.1 Zea mays clone pUT6468 MYB transcription factor (MYB21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680579.13e-92LOW QUALITY PROTEIN: transcription factor MYB59
TrEMBLA0A2S3H7I29e-89A0A2S3H7I2_9POAL; Uncharacterized protein
TrEMBLA0A3L6T1D18e-89A0A3L6T1D1_PANMI; Uncharacterized protein
STRINGPavir.Ca00655.1.p7e-87(Panicum virgatum)
STRINGSi024470m7e-87(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-51myb domain protein 59