PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00209.1.g00230.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 27809.8 Da PI: 7.8157 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1e-15 | 53 | 96 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr T++E+ ++++++q+G++ W++Iar+++ gRt++++k++w++ Zjn_sc00209.1.g00230.1.sm.mk 53 RGRITADEERVILELHAQWGSR-WSRIARCLP-GRTDNEIKNFWRT 96 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.46E-19 | 33 | 102 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-9 | 33 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.31 | 34 | 47 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 20.877 | 48 | 102 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-13 | 52 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-13 | 53 | 96 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.47E-10 | 57 | 96 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-17 | 60 | 98 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MVIDRARSTG SRRHDQSGVL TICFLFSSSA RLKRTGKSCR LRWVNYLHPG LRRGRITADE 60 ERVILELHAQ WGSRWSRIAR CLPGRTDNEI KNFWRTRTRK KALEHRRNTS NGNTATASSL 120 SSSSSAISSG SPPNRGWSSS PLVTESPPQG RSGRDDEAEL EEASTTTVAS QPQHQQQQLE 180 QKHCYTMDDQ LWNEMEAASA GYVADSCGGA GHDHGGAVVA VETPPSMPSP VWEFCSDYCL 240 LWRIDDEEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-16 | 34 | 102 | 40 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728360 | 9e-80 | KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680579.1 | 3e-75 | LOW QUALITY PROTEIN: transcription factor MYB59 | ||||
TrEMBL | K3ZD38 | 1e-70 | K3ZD38_SETIT; Uncharacterized protein | ||||
STRING | Si024470m | 2e-71 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.2 | 3e-39 | myb domain protein 59 |