PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00205.1.g00070.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HB-other | ||||||||
Protein Properties | Length: 148aa MW: 16432.1 Da PI: 5.0431 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.1 | 1.9e-10 | 25 | 62 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Zjn_sc00205.1.g00070.1.sm.mkhc 25 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 62 665559******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.969 | 3 | 66 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 6 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.28E-14 | 6 | 67 | No hit | No description |
SuperFamily | SSF46689 | 2.74E-18 | 7 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-30 | 9 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.8E-19 | 23 | 62 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MQGGAWRPQR GLPERSVSIL RAWLFEHFLH PYPKDSDKIM LAKQTGLTRS QVSNWFINAR 60 VRLWKPMVEE MYLEETKDRD AAAGGNDEGK SGGGGKSGNV DDNGGVDATP RPDREAAKGV 120 HGSSLLELAR DQQTVHAGFY YGDEEDED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-18 | 12 | 70 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 4e-18 | 12 | 70 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055979 | 2e-94 | BT055979.2 Zea mays full-length cDNA clone ZM_BFc0087K12 mRNA, complete cds. | |||
GenBank | BT085241 | 2e-94 | BT085241.2 Zea mays full-length cDNA clone ZM_BFb0339N15 mRNA, complete cds. | |||
GenBank | BT086092 | 2e-94 | BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827941.1 | 1e-63 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_025827942.1 | 1e-63 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_025827943.1 | 1e-63 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_025827944.1 | 1e-63 | BEL1-like homeodomain protein 1 | ||||
Swissprot | O65685 | 7e-43 | BLH6_ARATH; BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A1E5WEK5 | 9e-63 | A0A1E5WEK5_9POAL; BEL1-like homeodomain protein 1 | ||||
STRING | Pavir.Hb01912.1.p | 1e-66 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 2e-44 | BEL1-like homeodomain 6 |
Publications ? help Back to Top | |||
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