PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00200.1.g00070.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 568aa    MW: 61965.8 Da    PI: 8.1987
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00200.1.g00070.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.96e-51691971128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 
                                   +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++  ++ +  +++wy Fs++dkky+tg+r+nrat
  Zjn_sc00200.1.g00070.1.am.mk  69 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQEkcRIGSgPQNDWYLFSHKDKKYPTGTRTNRAT 148
                                   69****************************.9***************952444443456********************** PP

                           NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   ++g+Wkatg+dk+++s  ++ +g++ktLvfykgrap+g+k+dW+mheyrl
  Zjn_sc00200.1.g00070.1.am.mk 149 AAGFWKATGRDKAIYS-CTRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 197
                                   ****************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-5367202IPR003441NAC domain
PROSITE profilePS5100550.16869237IPR003441NAC domain
PfamPF023651.7E-2670197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MRFRLAVLFP EIFKVVCHGS GCYMALFCVP RLLPLVVNLP LPPSLSSSHF FLPGLARLAG  60
TNPRLKSVVP PGFRFHPTEE ELLTYYLKKK VASERIDLDV IRDVDLNKLE PWDIQEKCRI  120
GSGPQNDWYL FSHKDKKYPT GTRTNRATAA GFWKATGRDK AIYSCTRRIG MRKTLVFYKG  180
RAPHGQKSDW IMHEYRLDDA DHPTAAAAGD PHYPSPPLAS SRTPPSQQHA TVHVMVDDDE  240
VEISLSWVWG LSASSITRSA DERRRGGWVG VNRATESAHQ QDHQTCVPQA ADEPTKHRPA  300
PAAGSHSAHR QALVVDFCER RRLHQQRDKN GTLRIRGGAA AGEQEAQEEG WAICRMFKKK  360
NLVLHHGQSS GSGATVAATV VSKMASVPSA MESSPTSNGS SSVTVSDHVK AAQMLHSGSN  420
VDALDHILQY MGRSFGDNNK QDTKPPAALQ MDHHHLAAAC PSSSFYGKFM KLPPLEHDGS  480
VLLPNPAATD ASGIADWDSL DRLAAYELNG ISDASKNMVS FFDEPSAAAA TGAFTSAYTS  540
AGAGDGDLWS LARSSVSSLH ADLTMNNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-436919715140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750801e-174KT075080.1 Panicum virgatum secondary wall NAC master switch (SWN1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810838.12e-94NAC domain-containing protein 43-like
TrEMBLA0A1D6NW321e-127A0A1D6NW32_MAIZE; NAC domain-containing protein 43
STRINGSi006565m3e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3624234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32770.13e-73NAC domain containing protein 12