PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00184.1.g00170.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 411aa    MW: 47162.1 Da    PI: 7.7924
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00184.1.g00170.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1721.8e-53782121129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrkn 75 
                                   +ppGfrFhPtdeelv++yL+kkv++ +++l +vik+vd+yk+ePwdL++        ++e++e yfFs++dkky+tg+r+n
  Zjn_sc00184.1.g00170.1.am.mk  78 VPPGFRFHPTDEELVDYYLRKKVASGRIDL-NVIKDVDLYKIEPWDLQEkcrlggPGEEEQNEFYFFSHKDKKYPTGTRTN 157
                                   69****************************.99**************95355544223366699***************** PP

                           NAM  76 ratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   rat+ g+Wkatg+dk+++++ +++lvg++ktLv+ykgrap+g+k+dW+mheyrle
  Zjn_sc00184.1.g00170.1.am.mk 158 RATAVGFWKATGRDKPIYTNkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 212
                                   ******************9856777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5867239IPR003441NAC domain
PROSITE profilePS5100557.7378239IPR003441NAC domain
PfamPF023651.6E-2779211IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSSDGKLLST RYHKRCRMEV ISACVTTAND HACLLRVLLF VRRPLSHAYL QMQLQPAGGS  60
LGSTGMSSTQ AQAHQQLVPP GFRFHPTDEE LVDYYLRKKV ASGRIDLNVI KDVDLYKIEP  120
WDLQEKCRLG GPGEEEQNEF YFFSHKDKKY PTGTRTNRAT AVGFWKATGR DKPIYTNKQR  180
QLVGMRKTLV YYKGRAPNGH KSDWIMHEYR LETNENGPPQ ASHMLLHEEG WVVCRVFKKR  240
LPTTQRESDH DAPCWYVDDD GPFMHDLNSP MSRMPPHHSM ALQEQHIQML NNTYNYKREL  300
KLQFQMPTHH AFSTIPHDLE STSFHSLLIS PDHQINVHHP NQHVQLTESA VDQVTDWRVL  360
DKFVASQLSH DATKSAGYTD QGGILQVNEK QEVGHDYAST SASSSQVDPW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-49652402169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750911e-171KT075091.1 Panicum virgatum secondary wall NAC master switch (SWN7B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964278.10.0NAC domain-containing protein 105
SwissprotQ9FWX21e-104NAC7_ARATH; NAC domain-containing protein 7
TrEMBLK3XY210.0K3XY21_SETIT; Uncharacterized protein
STRINGPavir.Da02426.1.p0.0(Panicum virgatum)
STRINGSi006829m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-106NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]