PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00173.1.g00140.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 398aa    MW: 43877.7 Da    PI: 6.7442
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00173.1.g00140.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.2e-16107154148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
  Zjn_sc00173.1.g00140.1.am.mk 107 RGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 154
                                   788*******************************************97 PP
2Myb_DNA-binding48.61.9e-15160203146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
  Zjn_sc00173.1.g00140.1.am.mk 160 RGSFSQQEEDLIISLHEILGNR-WSQIASQLP-GRTDNEIKNFWNS 203
                                   899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.404102154IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-23102157IPR009057Homeodomain-like
SuperFamilySSF466898.99E-29104201IPR009057Homeodomain-like
SMARTSM007176.8E-13106156IPR001005SANT/Myb domain
PfamPF002493.4E-14107154IPR001005SANT/Myb domain
CDDcd001672.17E-11110154No hitNo description
PROSITE profilePS5129424.96155209IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-25158209IPR009057Homeodomain-like
SMARTSM007174.7E-15159207IPR001005SANT/Myb domain
PfamPF002493.0E-14160203IPR001005SANT/Myb domain
CDDcd001677.57E-11162202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGSHGWGGLG RVSGHYCTQQ CREGETGHHG GDGWNCKSTV PAARRIGRAS LVNTIDGAGK  60
ETTTRLKRTT VVGQHQRSQR ACVARLPCLP EESMGREAEA GRPKLRRGLW SPEEDEKLYN  120
HIIRYGVGCW SSVPKLAGLE RCGKSCRLRW INYLRPDLKR GSFSQQEEDL IISLHEILGN  180
RWSQIASQLP GRTDNEIKNF WNSCIKKKLR QQGIDPNTHK PINEDAAEPS DDCKQLPTDE  240
HCLPIAAAAS DPLAPHSPAV SFDPLSVTNA PAMQPSYGAA HSFRSDNLCD YNLSDAATYS  300
AYNGGGDSSS NSNSAWTCGN VIGGEPMPHM DIFGRDVEPY SFDPAKFSPW NHQQQQHHHH  360
DADAAAGFPI RSMSRDLPES CFDLARGALE DEFSVDFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-291012091108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0925931e-159FP092593.1 Phyllostachys edulis cDNA clone: bphylf046j05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968898.11e-172myb-related protein Hv33
RefseqXP_004968899.11e-172myb-related protein Hv33
TrEMBLK3XJZ71e-170K3XJZ7_SETIT; Uncharacterized protein
STRINGSi002220m1e-171(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111643041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.14e-72myb domain protein 61