PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00170.1.g00020.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 92aa MW: 10164.4 Da PI: 8.7742

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00170.1.g00020.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	27.9	3.4e-09	6	22	19	35
GATA 19 nktLCnaCGlyyrkkgl 35 +k+LCnaCG++yrkk++ Zjn_sc00170.1.g00020.1.sm.mkhc 6 HKSLCNACGIRYRKKRR 22 889***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	1.8E-5	5	23	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	1.4E-6	6	22	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MASADHKSLC NACGIRYRKK RRQELGLDQK QVQQQHQGEI KTEVKESNSN SSSGSSNNLE 60 VVQERKLLMG VEEAAFLLMT LSSSSTSTLL HG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151818.1	1e-33	GATA transcription factor 22
Refseq	XP_021310786.1	9e-34	GATA transcription factor 23-like
TrEMBL	A0A1D6FI51	5e-34	A0A1D6FI51_MAIZE; GATA transcription factor 16
STRING	Pavir.Ea01306.1.p	2e-35	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6721	28	54