PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00165.1.g00310.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Nin-like
Protein Properties Length: 825aa    MW: 90467.9 Da    PI: 7.5905
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00165.1.g00310.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.46.7e-29506557152
                          RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                     aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++
  Zjn_sc00165.1.g00310.1.sm.mkhc 506 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 557
                                     5899**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.894494577IPR003035RWP-RK domain
PfamPF020422.3E-25509557IPR003035RWP-RK domain
Gene3DG3DSA:3.10.20.2401.4E-7723764No hitNo description
SuperFamilySSF542772.4E-5723758No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MEGGGGGDPR PSVSLARTPS EGDLDLLEQL LSGDNAWFEV ASRSPNSLAS PPPTTAFFAA  60
ADATATNANT AGWLLQTGPS SVRERFDQAL SYIRETQSDG DVLVQLWVPV KGHDGQLLLT  120
TSGQPFTLDQ RSDSLIRFRE VSTKYHFSAD VMSGTPGLPG RVFIGRLPEW SPDVRYFTSH  180
EYPRVSHAQI LDVHGTMGLP VFEKGSHSCL GVIELIMTKQ KFNFTPELNA ICSALQFSSA  240
SYKDALPEIL EVLKAACLIH KLPLAQTWVT CAQQGKRGSR HSDENYRYCI SPIDEACFVN  300
EPRMQNFHEA CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS STKLEYPLSH HAKIFNLKGA  360
VAIRLRCTRT GSADFVLEFF LPTDCEALEE QKAVLDSLSG TMRSVCRTLR VVTDKEMENE  420
AVREMNELNS FTPQGKNRVE EPSFGDNSRD RRGETSWTSL AETSQHESEF AALRMHGLVP  480
SEGQDPSTSG VQTAAEGSKA KRRTKAEKTV SLQVLRQYFA GSLKDAARSL GVCPTTLKRI  540
CRQHGITRWP SRKIKKVDHS LKKLQQIIDS VHGAETAFQL NTLYKDLTNT SISSDNNLSG  600
SITVPPMSQN NLTDKHQHHK SISNVPSTSH SHSSCGHNSD SSPSCSGGAT KHAPQVVIDR  660
TKSGNPLKDS PVQPLQTENT SLYEHFPVQE ASINLLQDVT EKANGLQHYS RSPTSPKQNA  720
DVIMRVKATF GSEKVRFRLK PECNFQELKH EIAKRLSIVD MNSLDTVPIQ DTGSTRVAVP  780
FGMVCTPPAT AGVSAIIQPA KQVDMWTSGC LGAWRGQQGV WAMAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800527.10.0protein NLP1-like isoform X2
TrEMBLA0A3L6TG430.0A0A3L6TG43_PANMI; Protein NLP1 isoform X2
STRINGPavir.Bb02544.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein