PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00165.1.g00310.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Nin-like | ||||||||
Protein Properties | Length: 825aa MW: 90467.9 Da PI: 7.5905 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.4 | 6.7e-29 | 506 | 557 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++ Zjn_sc00165.1.g00310.1.sm.mkhc 506 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 557 5899**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.894 | 494 | 577 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.3E-25 | 509 | 557 | IPR003035 | RWP-RK domain |
Gene3D | G3DSA:3.10.20.240 | 1.4E-7 | 723 | 764 | No hit | No description |
SuperFamily | SSF54277 | 2.4E-5 | 723 | 758 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 825 aa Download sequence Send to blast |
MEGGGGGDPR PSVSLARTPS EGDLDLLEQL LSGDNAWFEV ASRSPNSLAS PPPTTAFFAA 60 ADATATNANT AGWLLQTGPS SVRERFDQAL SYIRETQSDG DVLVQLWVPV KGHDGQLLLT 120 TSGQPFTLDQ RSDSLIRFRE VSTKYHFSAD VMSGTPGLPG RVFIGRLPEW SPDVRYFTSH 180 EYPRVSHAQI LDVHGTMGLP VFEKGSHSCL GVIELIMTKQ KFNFTPELNA ICSALQFSSA 240 SYKDALPEIL EVLKAACLIH KLPLAQTWVT CAQQGKRGSR HSDENYRYCI SPIDEACFVN 300 EPRMQNFHEA CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS STKLEYPLSH HAKIFNLKGA 360 VAIRLRCTRT GSADFVLEFF LPTDCEALEE QKAVLDSLSG TMRSVCRTLR VVTDKEMENE 420 AVREMNELNS FTPQGKNRVE EPSFGDNSRD RRGETSWTSL AETSQHESEF AALRMHGLVP 480 SEGQDPSTSG VQTAAEGSKA KRRTKAEKTV SLQVLRQYFA GSLKDAARSL GVCPTTLKRI 540 CRQHGITRWP SRKIKKVDHS LKKLQQIIDS VHGAETAFQL NTLYKDLTNT SISSDNNLSG 600 SITVPPMSQN NLTDKHQHHK SISNVPSTSH SHSSCGHNSD SSPSCSGGAT KHAPQVVIDR 660 TKSGNPLKDS PVQPLQTENT SLYEHFPVQE ASINLLQDVT EKANGLQHYS RSPTSPKQNA 720 DVIMRVKATF GSEKVRFRLK PECNFQELKH EIAKRLSIVD MNSLDTVPIQ DTGSTRVAVP 780 FGMVCTPPAT AGVSAIIQPA KQVDMWTSGC LGAWRGQQGV WAMAA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00154 | DAP | Transfer from AT1G20640 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800527.1 | 0.0 | protein NLP1-like isoform X2 | ||||
TrEMBL | A0A3L6TG43 | 0.0 | A0A3L6TG43_PANMI; Protein NLP1 isoform X2 | ||||
STRING | Pavir.Bb02544.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5554 | 38 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |