PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00161.1.g00330.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 410aa    MW: 44303.3 Da    PI: 5.4834
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00161.1.g00330.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-06444539
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                     C+ +++++   +C+++   lC +C  + H+       H++
  Zjn_sc00161.1.g00330.1.sm.mkhc  4 LCDFCGNQRPMVYCRSDAASLCLSCDRNVHSAnalsrrHSR 44
                                    6*****************************65677777766 PP
2zf-B_box24.36.7e-084689441
                        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                      C+++ ++++   C   ++ lC++C  ++H+       H++++
  Zjn_sc00161.1.g00330.1.sm.mkhc 46 LLCDRCTSQPAMVRCLVESVSLCQNCDWNGHSAgsaaagHKRQT 89
                                    57*****************************6688999999876 PP
3CCT62.91e-21353396144
                             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                     R++a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrF k+ 
  Zjn_sc00161.1.g00330.1.sm.mkhc 353 RDNAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFIKAG 396
                                     899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.926147IPR000315B-box-type zinc finger
SMARTSM003363.1E-11147IPR000315B-box-type zinc finger
CDDcd000213.53E-7447No hitNo description
PROSITE profilePS501198.7024390IPR000315B-box-type zinc finger
PfamPF006431.4E-54690IPR000315B-box-type zinc finger
CDDcd000218.30E-54790No hitNo description
SMARTSM003360.244890IPR000315B-box-type zinc finger
PfamPF062039.8E-17353395IPR010402CCT domain
PROSITE profilePS5101715.319353395IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGALCDFCGN QRPMVYCRSD AASLCLSCDR NVHSANALSR RHSRTLLCDR CTSQPAMVRC  60
LVESVSLCQN CDWNGHSAGS AAAGHKRQTI NCYSGCPSSA ELSRIWSFVS DIPNVAPEPN  120
CEHGISMMSI SDNGVSNQDN AGGGRDNSLL DVASATLLND LDSRDKDKSL VGSSAGAGMK  180
LLPIATNQTA GPVDSTTPKV PYTPETDMFS KDTIYEDFCV DDVDLAFENY EELFGTSHIQ  240
TEQLFDDAGI DSYFEMKEAP AGNADEQQKL MQPANSNAVS ADSAMSNPGA KGDSSVCIPV  300
RQARSSLSLS FSGLTGDSGA GEQQDCVVSS VLLMVEPLWH PPGPEGSSAG GSRDNAITRY  360
KEKKKRRKFD KKIRYASRKA RADVRKRVKG RFIKAGEAYD YDPLCETRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362366KKKRR
2362367KKKRRK
3363367KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658624.10.0uncharacterized protein LOC100282916 isoform X3
SwissprotQ9SSE51e-121COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A3L6DB960.0A0A3L6DB96_MAIZE; Zinc finger protein CONSTANS-LIKE 10
STRINGGRMZM2G013398_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.43e-81CONSTANS-like 9