PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00156.1.g00040.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 452aa    MW: 47945.3 Da    PI: 10.2796
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00156.1.g00040.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY888.4e-28278336259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+kk++r+a+d +v++ tY g Hnh+
  Zjn_sc00156.1.g00040.1.am.mk 278 NDGCQWRKYGQKVAKGNPCPRAYYRCTGApDCPVRKKLQRCAQDASVLVSTYDGVHNHP 336
                                   8**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-27265336IPR003657WRKY domain
SuperFamilySSF1182902.88E-24270337IPR003657WRKY domain
PROSITE profilePS5081125.373272338IPR003657WRKY domain
SMARTSM007745.0E-32277337IPR003657WRKY domain
PfamPF031061.8E-23278336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MVASATEGAP GTRHPSYAVN YVRYPLIVAA IHHARACGRA DEASVRTDGQ QRQRRPGTRH  60
QIPGDQSGHV DFIYIYWGRR QAARRLRVQK GEEKRVVSLM EMKTRVLEVM RDAEKVPRID  120
ASEEHFRRVR NEAERRHRIG FPQLGDGPAS TSPCRDGTGD ERPPGSFLAL RLGATTNDPL  180
RASLPAKRGE EASSAVISLG LGLGLRSSSD GGGDEPVIGA KRQRTSDSGN GAGDVPSAVA  240
AGPGRYREVG RGKNASPPPP TRPGRVSFRM RCSAPTINDG CQWRKYGQKV AKGNPCPRAY  300
YRCTGAPDCP VRKKLQRCAQ DASVLVSTYD GVHNHPLTPY AAAMASAMAA AADSSSSAPL  360
VLPSSSSSFS SAPLRAVPVA MLPPQSYYAA ATGSGVTVPG AAMSSRNPMA GIVEKAVADP  420
KFRAAVMAAV ASYVGEHCGG KISELLTLAP PC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-182773371776Probable WRKY transcription factor 4
2lex_A2e-182773371776Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701689.18e-74probable WRKY transcription factor 31
TrEMBLA0A1E5VD975e-76A0A1E5VD97_9POAL; Putative WRKY transcription factor 9
STRINGSi002295m3e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-37WRKY DNA-binding protein 9