PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00155.1.g00560.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 288aa    MW: 31453 Da    PI: 8.3448
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00155.1.g00560.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-161562148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEd++l d++ ++G g+W++++++ g+ R +k+c++rw +yl
  Zjn_sc00155.1.g00560.1.am.mk 15 KGLWSPEEDQRLRDYILKHGLGCWSAVPAKAGLQRNGKSCRLRWINYL 62
                                  678*******************************************97 PP
2Myb_DNA-binding50.83.8e-1668113148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg +++eE+ + +++ ++lG++ W+ Ia +++ gRt++++k++w++yl
  Zjn_sc00155.1.g00560.1.am.mk  68 RGMFSQEEEVIVINLQAKLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 113
                                   788*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.461062IPR017930Myb domain
SuperFamilySSF466891.06E-2812109IPR009057Homeodomain-like
SMARTSM007171.6E-111464IPR001005SANT/Myb domain
PfamPF002492.1E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-221669IPR009057Homeodomain-like
CDDcd001679.28E-111862No hitNo description
PROSITE profilePS5129425.12563117IPR017930Myb domain
SMARTSM007179.2E-1567115IPR001005SANT/Myb domain
PfamPF002492.0E-1468113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2470117IPR009057Homeodomain-like
CDDcd001672.45E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGCRSCEKPK MNYRKGLWSP EEDQRLRDYI LKHGLGCWSA VPAKAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FSQEEEVIVI NLQAKLGNKW SQIAMHLPGR TDNEVKNYWN SYLKKRVMQA  120
QGTDPKSPPE LTSMSTTEPS IHHHVKNSSG STTTSHDHDA TISNGGSHAM SAAAPVAHQP  180
FDHQVTQQQP KNFTFSDWVP APESYSVSAH WPASTASSGN VTPSHGGAFG DQMSGSYGVL  240
PQQHQDHQGS ATAAHGAATG IAGAGYFDLL NMGDIYGGFS STNDDLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-25911723128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686641e-119AK368664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077L03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802030.11e-179transcription factor MYB10-like
SwissprotQ8LPH68e-56MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A1E5VK300.0A0A1E5VK30_9POAL; Transcription factor MYB86
STRINGPavir.Aa03518.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122962735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.37e-56myb domain protein 55