PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00155.1.g00090.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 145aa MW: 15891.7 Da PI: 6.9179 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Zjn_sc00155.1.g00090.1.sm.mk 24 YPCSFCERDFRSAQALGGHMNVH 46 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.66E-6 | 21 | 50 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.2E-4 | 22 | 48 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.094 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.0E-6 | 24 | 47 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MEREQQQPWS FMASSSFTWP PRSYPCSFCE RDFRSAQALG GHMNVHRRDR ARLKHAGSPP 60 PPPTAASSRA TAVEVVTPPV PNLNYSPPPP PQYHRDGGKK RSWWTDDVSC LEVGVLMSSC 120 TTASTDPAGG PDDDGLDLEL RLGVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 19 | 46 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 19 | 46 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804370.1 | 3e-34 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A3L6QJZ5 | 3e-33 | A0A3L6QJZ5_PANMI; Transcriptional regulator SUPERMAN-like | ||||
STRING | Pavir.Ab00024.1.p | 9e-35 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 4e-20 | C2H2 family protein |